(15 nodes) Small GTPase superfamily, ARF/SAR type network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G8P6_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (183 aa)
	H3G8L3_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	H3HBF5_PHYRM	Uncharacterized protein. (378 aa)
	H3H6J4_PHYRM	Uncharacterized protein. (256 aa)
	H3GA57_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (186 aa)
	H3GRN0_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	H3GY28_PHYRM	Uncharacterized protein. (246 aa)
	H3G8L2_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	H3G8B2_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (191 aa)
	H3G5H0_PHYRM	Uncharacterized protein. (153 aa)
	H3G5F9_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	H3G9E9_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (190 aa)
	H3G9M4_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (168 aa)
	H3G9T0_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (183 aa)
	H3GA42_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (186 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5F9_PHYRM	H3G5H0_PHYRM	H3G5F9	H3G5H0	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.612
H3G5F9_PHYRM	H3G8P6_PHYRM	H3G5F9	H3G8P6	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.534
H3G5F9_PHYRM	H3GA42_PHYRM	H3G5F9	H3GA42	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.520
H3G5F9_PHYRM	H3HBF5_PHYRM	H3G5F9	H3HBF5	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.612
H3G5H0_PHYRM	H3G5F9_PHYRM	H3G5H0	H3G5F9	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.612
H3G5H0_PHYRM	H3G8L2_PHYRM	H3G5H0	H3G8L2	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.612
H3G5H0_PHYRM	H3G8L3_PHYRM	H3G5H0	H3G8L3	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.612
H3G5H0_PHYRM	H3G8P6_PHYRM	H3G5H0	H3G8P6	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.669
H3G5H0_PHYRM	H3G9E9_PHYRM	H3G5H0	H3G9E9	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.612
H3G5H0_PHYRM	H3G9M4_PHYRM	H3G5H0	H3G9M4	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.612
H3G5H0_PHYRM	H3G9T0_PHYRM	H3G5H0	H3G9T0	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.823
H3G5H0_PHYRM	H3GA57_PHYRM	H3G5H0	H3GA57	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.612
H3G5H0_PHYRM	H3GRN0_PHYRM	H3G5H0	H3GRN0	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.583
H3G8B2_PHYRM	H3H6J4_PHYRM	H3G8B2	H3H6J4	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Uncharacterized protein.	0.462
H3G8L2_PHYRM	H3G5H0_PHYRM	H3G8L2	H3G5H0	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.612
H3G8L2_PHYRM	H3G8P6_PHYRM	H3G8L2	H3G8P6	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.550
H3G8L2_PHYRM	H3GA42_PHYRM	H3G8L2	H3GA42	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.520
H3G8L2_PHYRM	H3HBF5_PHYRM	H3G8L2	H3HBF5	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.612
H3G8L3_PHYRM	H3G5H0_PHYRM	H3G8L3	H3G5H0	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.612
H3G8L3_PHYRM	H3G8P6_PHYRM	H3G8L3	H3G8P6	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.549

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