(73 nodes) Nucleic acid-binding, OB-fold network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G592_PHYRM	RNB domain-containing protein. (187 aa)
	H3GGH5_PHYRM	DNA helicase; Belongs to the MCM family. (1027 aa)
	H3GGD4_PHYRM	Uncharacterized protein. (1368 aa)
	H3GFU0_PHYRM	Uncharacterized protein. (425 aa)
	H3GDZ4_PHYRM	tRNA-binding domain-containing protein. (425 aa)
	H3GDF8_PHYRM	MCM domain-containing protein; Belongs to the MCM family. (1209 aa)
	H3GCB9_PHYRM	Replication protein A subunit. (622 aa)
	H3GCA3_PHYRM	Uncharacterized protein. (1940 aa)
	H3GAY1_PHYRM	Ribosomal_S17_N domain-containing protein. (160 aa)
	H3GAS2_PHYRM	DNA helicase; Belongs to the MCM family. (717 aa)
	H3GAJ9_PHYRM	DNA helicase; Belongs to the MCM family. (782 aa)
	H3GAD4_PHYRM	Ribosomal_S17_N domain-containing protein. (152 aa)
	H3GA62_PHYRM	S1 motif domain-containing protein. (334 aa)
	H3G9T8_PHYRM	S1 domain-containing protein. (290 aa)
	H3G9M1_PHYRM	Eukaryotic translation initiation factor 5A. (161 aa)
	H3G987_PHYRM	Uncharacterized protein. (1184 aa)
	H3G973_PHYRM	Ribosomal_L2_C domain-containing protein. (256 aa)
	H3G952_PHYRM	RuvB-like helicase; Belongs to the RuvB family. (453 aa)
	H3G8N3_PHYRM	AA_TRNA_LIGASE_II domain-containing protein. (495 aa)
	H3G8K6_PHYRM	AAA domain-containing protein; Belongs to the AAA ATPase family. (445 aa)
	H3G8K3_PHYRM	AA_TRNA_LIGASE_II domain-containing protein. (507 aa)
	H3G8G8_PHYRM	Lysine--tRNA ligase. (586 aa)
	H3G8D8_PHYRM	AAA domain-containing protein; Belongs to the AAA ATPase family. (425 aa)
	H3G8A3_PHYRM	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (139 aa)
	H3G7X1_PHYRM	DNA helicase; Belongs to the MCM family. (699 aa)
	H3G7B0_PHYRM	Uncharacterized protein. (334 aa)
	H3GMI1_PHYRM	HTH La-type RNA-binding domain-containing protein. (637 aa)
	H3GMA2_PHYRM	C3H1-type domain-containing protein. (439 aa)
	H3GLH3_PHYRM	AAA domain-containing protein; Belongs to the AAA ATPase family. (438 aa)
	H3GL94_PHYRM	C3H1-type domain-containing protein. (440 aa)
	H3GIY3_PHYRM	S1-like domain-containing protein. (193 aa)
	H3GIT1_PHYRM	AA_TRNA_LIGASE_II domain-containing protein. (635 aa)
	H3GI13_PHYRM	Uncharacterized protein. (177 aa)
	H3GHM5_PHYRM	eIF-5a domain-containing protein. (199 aa)
	H3GV11_PHYRM	Uncharacterized protein. (676 aa)
	H3GUW6_PHYRM	Stn1 domain-containing protein. (217 aa)
	H3GUM7_PHYRM	Uncharacterized protein. (672 aa)
	H3GUH6_PHYRM	RNB domain-containing protein; Belongs to the RNR ribonuclease family. (1089 aa)
	H3GU44_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	H3GS93_PHYRM	mRNA_cap_enzyme domain-containing protein. (453 aa)
	H3GRQ2_PHYRM	Uncharacterized protein. (144 aa)
	H3GRD9_PHYRM	Uncharacterized protein. (290 aa)
	H3HD78_PHYRM	AAA domain-containing protein; Belongs to the AAA ATPase family. (405 aa)
	H3HDA1_PHYRM	DNA ligase. (806 aa)
	H3HDK4_PHYRM	SWIM-type domain-containing protein. (595 aa)
	H3G6Z8_PHYRM	MCM domain-containing protein; Belongs to the MCM family. (704 aa)
	MCM7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (737 aa)
	H3G6I6_PHYRM	DNA helicase; Belongs to the MCM family. (692 aa)
	H3HDW5_PHYRM	AA_TRNA_LIGASE_II domain-containing protein. (502 aa)
	H3HE25_PHYRM	DNA_ligase_OB_2 domain-containing protein. (630 aa)
	H3GWZ1_PHYRM	R3H domain-containing protein. (1355 aa)
	H3GZ71_PHYRM	RNB domain-containing protein. (507 aa)
	H3H0N6_PHYRM	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (438 aa)
	H3H0V1_PHYRM	tRNA-binding domain-containing protein. (177 aa)
	H3H1A3_PHYRM	tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (726 aa)
	H3H2T6_PHYRM	Uncharacterized protein. (1943 aa)
	H3H303_PHYRM	Uncharacterized protein. (113 aa)
	H3H843_PHYRM	RNB domain-containing protein. (735 aa)
	H3H8K4_PHYRM	Uncharacterized protein. (208 aa)
	H3HAM1_PHYRM	AAA domain-containing protein; Belongs to the AAA ATPase family. (394 aa)
	H3GH20_PHYRM	Uncharacterized protein. (169 aa)
	H3HBA3_PHYRM	RNB domain-containing protein; Belongs to the RNR ribonuclease family. (1186 aa)
	H3HBE3_PHYRM	Sm domain-containing protein. (415 aa)
	H3HBL2_PHYRM	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (142 aa)
	H3HBR2_PHYRM	Uncharacterized protein. (203 aa)
	H3HC51_PHYRM	Lysine--tRNA ligase. (547 aa)
	H3HCR0_PHYRM	Uncharacterized protein. (86 aa)
	H3G6E9_PHYRM	tRNA-binding domain-containing protein. (154 aa)
	H3G5C8_PHYRM	DNA ligase. (627 aa)
	H3G5A1_PHYRM	Uncharacterized protein. (59 aa)
	H3G590_PHYRM	S1 motif domain-containing protein. (703 aa)
	H3G536_PHYRM	Uncharacterized protein. (80 aa)
	H3G4Y1_PHYRM	AAA domain-containing protein; Belongs to the AAA ATPase family. (319 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G4Y1_PHYRM	H3G8D8_PHYRM	H3G4Y1	H3G8D8	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
H3G4Y1_PHYRM	H3G8K6_PHYRM	H3G4Y1	H3G8K6	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
H3G4Y1_PHYRM	H3G973_PHYRM	H3G4Y1	H3G973	AAA domain-containing protein; Belongs to the AAA ATPase family.	Ribosomal_L2_C domain-containing protein.	0.590
H3G4Y1_PHYRM	H3GA62_PHYRM	H3G4Y1	H3GA62	AAA domain-containing protein; Belongs to the AAA ATPase family.	S1 motif domain-containing protein.	0.476
H3G4Y1_PHYRM	H3GAD4_PHYRM	H3G4Y1	H3GAD4	AAA domain-containing protein; Belongs to the AAA ATPase family.	Ribosomal_S17_N domain-containing protein.	0.421
H3G4Y1_PHYRM	H3GAY1_PHYRM	H3G4Y1	H3GAY1	AAA domain-containing protein; Belongs to the AAA ATPase family.	Ribosomal_S17_N domain-containing protein.	0.421
H3G4Y1_PHYRM	H3GLH3_PHYRM	H3G4Y1	H3GLH3	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
H3G4Y1_PHYRM	H3HAM1_PHYRM	H3G4Y1	H3HAM1	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
H3G4Y1_PHYRM	H3HD78_PHYRM	H3G4Y1	H3HD78	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
H3G536_PHYRM	H3G5A1_PHYRM	H3G536	H3G5A1	Uncharacterized protein.	Uncharacterized protein.	0.990
H3G536_PHYRM	H3G8A3_PHYRM	H3G536	H3G8A3	Uncharacterized protein.	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.989
H3G536_PHYRM	H3G8G8_PHYRM	H3G536	H3G8G8	Uncharacterized protein.	Lysine--tRNA ligase.	0.464
H3G536_PHYRM	H3G973_PHYRM	H3G536	H3G973	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.979
H3G536_PHYRM	H3G987_PHYRM	H3G536	H3G987	Uncharacterized protein.	Uncharacterized protein.	0.426
H3G536_PHYRM	H3G9M1_PHYRM	H3G536	H3G9M1	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.941
H3G536_PHYRM	H3G9T8_PHYRM	H3G536	H3G9T8	Uncharacterized protein.	S1 domain-containing protein.	0.418
H3G536_PHYRM	H3GA62_PHYRM	H3G536	H3GA62	Uncharacterized protein.	S1 motif domain-containing protein.	0.969
H3G536_PHYRM	H3GCA3_PHYRM	H3G536	H3GCA3	Uncharacterized protein.	Uncharacterized protein.	0.986
H3G536_PHYRM	H3GH20_PHYRM	H3G536	H3GH20	Uncharacterized protein.	Uncharacterized protein.	0.464
H3G536_PHYRM	H3GIY3_PHYRM	H3G536	H3GIY3	Uncharacterized protein.	S1-like domain-containing protein.	0.594

page 1 of 37

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About