(46 nodes) Mitochondrial substrate/solute carrier network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3H0V9_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (200 aa)
	H3GBF0_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (290 aa)
	H3H1C7_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (335 aa)
	H3H2H4_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (134 aa)
	H3H2I0_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (350 aa)
	H3H8U5_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (367 aa)
	H3H8Z2_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (311 aa)
	H3HAS1_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (316 aa)
	H3HCA0_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (263 aa)
	H3HCG9_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (317 aa)
	H3HDE3_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (329 aa)
	H3HDQ5_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (246 aa)
	H3HDT9_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (1533 aa)
	H3GVU4_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (342 aa)
	H3GSC8_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (176 aa)
	H3GVU5_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (333 aa)
	H3GW25_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (380 aa)
	H3GX75_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (288 aa)
	H3GXC9_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (329 aa)
	H3GAH8_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (305 aa)
	H3G9X5_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (337 aa)
	H3G8W4_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (305 aa)
	H3G8V3_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (319 aa)
	H3GYD6_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (293 aa)
	H3G8S2_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (310 aa)
	H3G8N6_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (278 aa)
	H3G8N2_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (308 aa)
	H3GYT7_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (485 aa)
	H3G858_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (291 aa)
	H3G7P2_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (295 aa)
	H3GV89_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (390 aa)
	H3GS89_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (296 aa)
	H3GRW6_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (1306 aa)
	H3GRD8_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (328 aa)
	H3GR84_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (357 aa)
	H3GQM4_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (294 aa)
	H3GPZ2_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (290 aa)
	H3GLF6_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (307 aa)
	H3GK99_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (364 aa)
	H3GJ16_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (323 aa)
	H3GI43_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (501 aa)
	H3GI19_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (317 aa)
	H3GG07_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (298 aa)
	H3GDW0_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (301 aa)
	H3GCJ5_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (349 aa)
	H3GCD2_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (287 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G858_PHYRM	H3G8S2_PHYRM	H3G858	H3G8S2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.570
H3G8N2_PHYRM	H3G8S2_PHYRM	H3G8N2	H3G8S2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.570
H3G8N6_PHYRM	H3GSC8_PHYRM	H3G8N6	H3GSC8	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.496
H3G8N6_PHYRM	H3H2I0_PHYRM	H3G8N6	H3H2I0	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.496
H3G8S2_PHYRM	H3G858_PHYRM	H3G8S2	H3G858	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.570
H3G8S2_PHYRM	H3G8N2_PHYRM	H3G8S2	H3G8N2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.570
H3G8S2_PHYRM	H3G9X5_PHYRM	H3G8S2	H3G9X5	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.557
H3G8S2_PHYRM	H3GI43_PHYRM	H3G8S2	H3GI43	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.570
H3G8S2_PHYRM	H3GS89_PHYRM	H3G8S2	H3GS89	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.570
H3G8S2_PHYRM	H3GV89_PHYRM	H3G8S2	H3GV89	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.557
H3G9X5_PHYRM	H3G8S2_PHYRM	H3G9X5	H3G8S2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.557
H3GBF0_PHYRM	H3GSC8_PHYRM	H3GBF0	H3GSC8	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.506
H3GBF0_PHYRM	H3H2I0_PHYRM	H3GBF0	H3H2I0	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.515
H3GCD2_PHYRM	H3GG07_PHYRM	H3GCD2	H3GG07	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.438
H3GCJ5_PHYRM	H3GPZ2_PHYRM	H3GCJ5	H3GPZ2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.483
H3GG07_PHYRM	H3GCD2_PHYRM	H3GG07	H3GCD2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.438
H3GI43_PHYRM	H3G8S2_PHYRM	H3GI43	H3G8S2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.570
H3GPZ2_PHYRM	H3GCJ5_PHYRM	H3GPZ2	H3GCJ5	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.483
H3GS89_PHYRM	H3G8S2_PHYRM	H3GS89	H3G8S2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.570
H3GSC8_PHYRM	H3G8N6_PHYRM	H3GSC8	H3G8N6	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.496

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