(39 nodes) Ribosomal protein S5 domain 2-type fold network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G745_PHYRM	Uncharacterized protein. (481 aa)
	H3G7M6_PHYRM	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1174 aa)
	H3G7I0_PHYRM	Uncharacterized protein. (746 aa)
	H3G7B9_PHYRM	Lon protease homolog; Belongs to the peptidase S16 family. (814 aa)
	H3G8I7_PHYRM	Tr-type G domain-containing protein. (850 aa)
	H3G8T5_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	H3G8Y9_PHYRM	Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family. (450 aa)
	H3G917_PHYRM	Tr-type G domain-containing protein. (983 aa)
	H3HBR3_PHYRM	Uncharacterized protein. (410 aa)
	H3HB33_PHYRM	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes. (449 aa)
	H3H6H4_PHYRM	Uncharacterized protein. (278 aa)
	H3H4G2_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (325 aa)
	H3H0P3_PHYRM	Uncharacterized protein. (276 aa)
	H3H0L5_PHYRM	Uncharacterized protein. (421 aa)
	H3GYQ9_PHYRM	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1189 aa)
	H3GX87_PHYRM	Uncharacterized protein. (282 aa)
	H3GV34_PHYRM	Uncharacterized protein. (252 aa)
	H3GTF9_PHYRM	Uncharacterized protein. (412 aa)
	H3GPZ1_PHYRM	Uncharacterized protein. (204 aa)
	H3GPJ8_PHYRM	Tr-type G domain-containing protein. (810 aa)
	H3GKN4_PHYRM	RNase_PH domain-containing protein. (601 aa)
	H3G949_PHYRM	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (262 aa)
	H3G966_PHYRM	Heat shock protein 90. (705 aa)
	H3G9C2_PHYRM	Uncharacterized protein. (308 aa)
	H3G9L2_PHYRM	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (706 aa)
	H3G7E5_PHYRM	RECA_2 domain-containing protein. (459 aa)
	H3GAH3_PHYRM	Uncharacterized protein. (421 aa)
	H3GB79_PHYRM	Uncharacterized protein. (421 aa)
	H3GCB3_PHYRM	Uncharacterized protein. (295 aa)
	H3GCH9_PHYRM	Uncharacterized protein. (685 aa)
	H3GCK5_PHYRM	HATPase_c domain-containing protein. (849 aa)
	H3GFL4_PHYRM	Mevalonate kinase. (384 aa)
	H3GFZ4_PHYRM	Lon protease homolog; Belongs to the peptidase S16 family. (916 aa)
	H3GHQ9_PHYRM	RWD domain-containing protein; Belongs to the arginase family. (661 aa)
	H3GHR0_PHYRM	RWD domain-containing protein. (293 aa)
	H3GIH3_PHYRM	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (312 aa)
	H3GJQ6_PHYRM	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1317 aa)
	H3G590_PHYRM	S1 motif domain-containing protein. (703 aa)
	H3G6U9_PHYRM	Tr-type G domain-containing protein. (1042 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G590_PHYRM	H3G6U9_PHYRM	H3G590	H3G6U9	S1 motif domain-containing protein.	Tr-type G domain-containing protein.	0.573
H3G590_PHYRM	H3G7E5_PHYRM	H3G590	H3G7E5	S1 motif domain-containing protein.	RECA_2 domain-containing protein.	0.401
H3G590_PHYRM	H3G8I7_PHYRM	H3G590	H3G8I7	S1 motif domain-containing protein.	Tr-type G domain-containing protein.	0.573
H3G590_PHYRM	H3G8T5_PHYRM	H3G590	H3G8T5	S1 motif domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.530
H3G590_PHYRM	H3G917_PHYRM	H3G590	H3G917	S1 motif domain-containing protein.	Tr-type G domain-containing protein.	0.598
H3G590_PHYRM	H3G949_PHYRM	H3G590	H3G949	S1 motif domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.482
H3G590_PHYRM	H3G9L2_PHYRM	H3G590	H3G9L2	S1 motif domain-containing protein.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.608
H3G590_PHYRM	H3GIH3_PHYRM	H3G590	H3GIH3	S1 motif domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.482
H3G590_PHYRM	H3GKN4_PHYRM	H3G590	H3GKN4	S1 motif domain-containing protein.	RNase_PH domain-containing protein.	0.537
H3G590_PHYRM	H3GV34_PHYRM	H3G590	H3GV34	S1 motif domain-containing protein.	Uncharacterized protein.	0.542
H3G590_PHYRM	H3H0P3_PHYRM	H3G590	H3H0P3	S1 motif domain-containing protein.	Uncharacterized protein.	0.542
H3G590_PHYRM	H3H4G2_PHYRM	H3G590	H3H4G2	S1 motif domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.401
H3G6U9_PHYRM	H3G590_PHYRM	H3G6U9	H3G590	Tr-type G domain-containing protein.	S1 motif domain-containing protein.	0.573
H3G6U9_PHYRM	H3G8T5_PHYRM	H3G6U9	H3G8T5	Tr-type G domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.872
H3G6U9_PHYRM	H3G949_PHYRM	H3G6U9	H3G949	Tr-type G domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.929
H3G6U9_PHYRM	H3GIH3_PHYRM	H3G6U9	H3GIH3	Tr-type G domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.929
H3G6U9_PHYRM	H3H4G2_PHYRM	H3G6U9	H3H4G2	Tr-type G domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.958
H3G7B9_PHYRM	H3G966_PHYRM	H3G7B9	H3G966	Lon protease homolog; Belongs to the peptidase S16 family.	Heat shock protein 90.	0.678
H3G7B9_PHYRM	H3GCH9_PHYRM	H3G7B9	H3GCH9	Lon protease homolog; Belongs to the peptidase S16 family.	Uncharacterized protein.	0.678
H3G7B9_PHYRM	H3GCK5_PHYRM	H3G7B9	H3GCK5	Lon protease homolog; Belongs to the peptidase S16 family.	HATPase_c domain-containing protein.	0.678

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