(70 nodes) Nucleotide-diphospho-sugar transferases network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GKA9_PHYRM	Uncharacterized protein. (1962 aa)
	H3GDI8_PHYRM	Uncharacterized protein. (487 aa)
	H3GDI7_PHYRM	Uncharacterized protein. (493 aa)
	H3GDI6_PHYRM	Uncharacterized protein. (336 aa)
	H3GDI5_PHYRM	Uncharacterized protein. (1769 aa)
	H3GDI2_PHYRM	Ig-like domain-containing protein. (1707 aa)
	H3GDI1_PHYRM	Uncharacterized protein. (746 aa)
	H3GDI0_PHYRM	Uncharacterized protein. (652 aa)
	H3GDH9_PHYRM	Uncharacterized protein. (663 aa)
	H3GDH7_PHYRM	Uncharacterized protein. (881 aa)
	H3GA81_PHYRM	NTP_transferase domain-containing protein. (359 aa)
	H3G934_PHYRM	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins. (240 aa)
	H3G7P1_PHYRM	Uncharacterized protein. (292 aa)
	H3G756_PHYRM	Uncharacterized protein. (395 aa)
	H3G6G3_PHYRM	Uncharacterized protein. (383 aa)
	CES4	Cellulose synthase 4. (1019 aa)
	CES2	Cellulose synthase 2. (1028 aa)
	CES1	Cellulose synthase 1. (994 aa)
	H3GFF1_PHYRM	Uncharacterized protein. (520 aa)
	H3GFQ5_PHYRM	NTP_transferase domain-containing protein. (435 aa)
	H3GG71_PHYRM	Uncharacterized protein. (774 aa)
	H3GG76_PHYRM	Uncharacterized protein. (1277 aa)
	H3GG77_PHYRM	Uncharacterized protein. (499 aa)
	H3GG78_PHYRM	Uncharacterized protein. (377 aa)
	H3GG79_PHYRM	Uncharacterized protein. (328 aa)
	H3GIC2_PHYRM	Uncharacterized protein. (496 aa)
	H3GK53_PHYRM	Uncharacterized protein. (474 aa)
	H3GKA8_PHYRM	Uncharacterized protein. (502 aa)
	H3GDJ4_PHYRM	Uncharacterized protein. (581 aa)
	H3GDJ5_PHYRM	Uncharacterized protein. (611 aa)
	H3GE69_PHYRM	Uncharacterized protein. (914 aa)
	H3GEB8_PHYRM	Uncharacterized protein. (967 aa)
	H3GDJ2_PHYRM	Uncharacterized protein. (611 aa)
	H3GDJ3_PHYRM	Uncharacterized protein. (414 aa)
	H3GKU1_PHYRM	W2 domain-containing protein. (742 aa)
	H3GL71_PHYRM	Uncharacterized protein. (236 aa)
	H3GLH6_PHYRM	Chitin_synth_1N domain-containing protein. (1025 aa)
	H3GMD5_PHYRM	Uncharacterized protein. (557 aa)
	H3GNE0_PHYRM	Uncharacterized protein. (597 aa)
	H3GNE1_PHYRM	Uncharacterized protein. (623 aa)
	H3GSA8_PHYRM	C-CAP/cofactor C-like domain-containing protein. (936 aa)
	H3GTK5_PHYRM	PPM-type phosphatase domain-containing protein. (1018 aa)
	H3GWP8_PHYRM	Uncharacterized protein. (556 aa)
	H3GWY6_PHYRM	Uncharacterized protein. (542 aa)
	H3GX90_PHYRM	NTP_transferase domain-containing protein. (319 aa)
	H3H043_PHYRM	Uncharacterized protein. (480 aa)
	H3H044_PHYRM	Uncharacterized protein. (462 aa)
	H3H0S7_PHYRM	Uncharacterized protein. (387 aa)
	H3H1B0_PHYRM	Abhydrolase_3 domain-containing protein. (722 aa)
	H3H1D0_PHYRM	MIT domain-containing protein. (1146 aa)
	H3H2V1_PHYRM	Uncharacterized protein. (649 aa)
	H3H438_PHYRM	Uncharacterized protein. (497 aa)
	H3H439_PHYRM	Uncharacterized protein. (1027 aa)
	H3H440_PHYRM	Uncharacterized protein. (485 aa)
	H3H7F3_PHYRM	Uncharacterized protein. (305 aa)
	H3H7H1_PHYRM	Uncharacterized protein. (339 aa)
	H3H834_PHYRM	Uncharacterized protein. (642 aa)
	H3H8M2_PHYRM	MYND-type domain-containing protein. (584 aa)
	H3H929_PHYRM	Amb_all domain-containing protein. (621 aa)
	H3HB30_PHYRM	Uncharacterized protein. (587 aa)
	H3HBA7_PHYRM	Uncharacterized protein. (397 aa)
	H3HC02_PHYRM	Uncharacterized protein. (1495 aa)
	H3HCC4_PHYRM	Uncharacterized protein. (535 aa)
	H3HD30_PHYRM	Uncharacterized protein. (598 aa)
	H3HD79_PHYRM	Uncharacterized protein. (1049 aa)
	H3HDW3_PHYRM	Cellulose synthase 3. (2468 aa)
	H3HE88_PHYRM	Uncharacterized protein. (527 aa)
	H3GDJ1_PHYRM	Uncharacterized protein. (553 aa)
	H3GDJ0_PHYRM	Uncharacterized protein. (533 aa)
	H3GDI9_PHYRM	Uncharacterized protein. (188 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CES1	H3G756_PHYRM	A5A601	H3G756	Cellulose synthase 1.	Uncharacterized protein.	0.912
CES1	H3GFF1_PHYRM	A5A601	H3GFF1	Cellulose synthase 1.	Uncharacterized protein.	0.771
CES2	H3G756_PHYRM	A5A602	H3G756	Cellulose synthase 2.	Uncharacterized protein.	0.862
CES2	H3GFF1_PHYRM	A5A602	H3GFF1	Cellulose synthase 2.	Uncharacterized protein.	0.771
CES4	H3GLH6_PHYRM	A5A604	H3GLH6	Cellulose synthase 4.	Chitin_synth_1N domain-containing protein.	0.440
CES4	H3H1D0_PHYRM	A5A604	H3H1D0	Cellulose synthase 4.	MIT domain-containing protein.	0.440
H3G6G3_PHYRM	H3G756_PHYRM	H3G6G3	H3G756	Uncharacterized protein.	Uncharacterized protein.	0.628
H3G6G3_PHYRM	H3GA81_PHYRM	H3G6G3	H3GA81	Uncharacterized protein.	NTP_transferase domain-containing protein.	0.532
H3G6G3_PHYRM	H3GFF1_PHYRM	H3G6G3	H3GFF1	Uncharacterized protein.	Uncharacterized protein.	0.533
H3G6G3_PHYRM	H3GFQ5_PHYRM	H3G6G3	H3GFQ5	Uncharacterized protein.	NTP_transferase domain-containing protein.	0.512
H3G6G3_PHYRM	H3GKU1_PHYRM	H3G6G3	H3GKU1	Uncharacterized protein.	W2 domain-containing protein.	0.508
H3G6G3_PHYRM	H3GLH6_PHYRM	H3G6G3	H3GLH6	Uncharacterized protein.	Chitin_synth_1N domain-containing protein.	0.875
H3G6G3_PHYRM	H3GMD5_PHYRM	H3G6G3	H3GMD5	Uncharacterized protein.	Uncharacterized protein.	0.533
H3G6G3_PHYRM	H3GX90_PHYRM	H3G6G3	H3GX90	Uncharacterized protein.	NTP_transferase domain-containing protein.	0.508
H3G6G3_PHYRM	H3H1D0_PHYRM	H3G6G3	H3H1D0	Uncharacterized protein.	MIT domain-containing protein.	0.851
H3G6G3_PHYRM	H3HD79_PHYRM	H3G6G3	H3HD79	Uncharacterized protein.	Uncharacterized protein.	0.772
H3G756_PHYRM	CES1	H3G756	A5A601	Uncharacterized protein.	Cellulose synthase 1.	0.912
H3G756_PHYRM	CES2	H3G756	A5A602	Uncharacterized protein.	Cellulose synthase 2.	0.862
H3G756_PHYRM	H3G6G3_PHYRM	H3G756	H3G6G3	Uncharacterized protein.	Uncharacterized protein.	0.628
H3G756_PHYRM	H3G7P1_PHYRM	H3G756	H3G7P1	Uncharacterized protein.	Uncharacterized protein.	0.628

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