(18 nodes) Zinc finger, CCCH-type superfamily network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GL94_PHYRM	C3H1-type domain-containing protein. (440 aa)
	H3GJW5_PHYRM	Uncharacterized protein. (597 aa)
	H3GMA2_PHYRM	C3H1-type domain-containing protein. (439 aa)
	H3GN50_PHYRM	Uncharacterized protein. (976 aa)
	H3GNL9_PHYRM	Uncharacterized protein. (249 aa)
	H3GQT7_PHYRM	Uncharacterized protein. (750 aa)
	H3GHT1_PHYRM	Uncharacterized protein. (333 aa)
	H3GG35_PHYRM	Uncharacterized protein. (377 aa)
	H3GE91_PHYRM	C3H1-type domain-containing protein. (540 aa)
	H3GD55_PHYRM	Uncharacterized protein. (443 aa)
	H3GSG9_PHYRM	Uncharacterized protein. (402 aa)
	H3GWN9_PHYRM	Uncharacterized protein. (427 aa)
	H3GWX4_PHYRM	Uncharacterized protein. (747 aa)
	H3G715_PHYRM	C3H1-type domain-containing protein. (206 aa)
	H3H253_PHYRM	Uncharacterized protein. (524 aa)
	H3H388_PHYRM	Uncharacterized protein. (400 aa)
	H3H725_PHYRM	Uncharacterized protein. (169 aa)
	H3HBW9_PHYRM	C3H1-type domain-containing protein. (686 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G715_PHYRM	H3GD55_PHYRM	H3G715	H3GD55	C3H1-type domain-containing protein.	Uncharacterized protein.	0.808
H3G715_PHYRM	H3GHT1_PHYRM	H3G715	H3GHT1	C3H1-type domain-containing protein.	Uncharacterized protein.	0.935
H3G715_PHYRM	H3GN50_PHYRM	H3G715	H3GN50	C3H1-type domain-containing protein.	Uncharacterized protein.	0.565
H3G715_PHYRM	H3GWN9_PHYRM	H3G715	H3GWN9	C3H1-type domain-containing protein.	Uncharacterized protein.	0.879
H3GD55_PHYRM	H3G715_PHYRM	H3GD55	H3G715	Uncharacterized protein.	C3H1-type domain-containing protein.	0.808
H3GD55_PHYRM	H3GE91_PHYRM	H3GD55	H3GE91	Uncharacterized protein.	C3H1-type domain-containing protein.	0.486
H3GD55_PHYRM	H3GWX4_PHYRM	H3GD55	H3GWX4	Uncharacterized protein.	Uncharacterized protein.	0.479
H3GE91_PHYRM	H3GD55_PHYRM	H3GE91	H3GD55	C3H1-type domain-containing protein.	Uncharacterized protein.	0.486
H3GE91_PHYRM	H3GWX4_PHYRM	H3GE91	H3GWX4	C3H1-type domain-containing protein.	Uncharacterized protein.	0.494
H3GHT1_PHYRM	H3G715_PHYRM	H3GHT1	H3G715	Uncharacterized protein.	C3H1-type domain-containing protein.	0.935
H3GHT1_PHYRM	H3GWN9_PHYRM	H3GHT1	H3GWN9	Uncharacterized protein.	Uncharacterized protein.	0.905
H3GN50_PHYRM	H3G715_PHYRM	H3GN50	H3G715	Uncharacterized protein.	C3H1-type domain-containing protein.	0.565
H3GWN9_PHYRM	H3G715_PHYRM	H3GWN9	H3G715	Uncharacterized protein.	C3H1-type domain-containing protein.	0.879
H3GWN9_PHYRM	H3GHT1_PHYRM	H3GWN9	H3GHT1	Uncharacterized protein.	Uncharacterized protein.	0.905
H3GWN9_PHYRM	H3GWX4_PHYRM	H3GWN9	H3GWX4	Uncharacterized protein.	Uncharacterized protein.	0.826
H3GWX4_PHYRM	H3GD55_PHYRM	H3GWX4	H3GD55	Uncharacterized protein.	Uncharacterized protein.	0.479
H3GWX4_PHYRM	H3GE91_PHYRM	H3GWX4	H3GE91	Uncharacterized protein.	C3H1-type domain-containing protein.	0.494
H3GWX4_PHYRM	H3GWN9_PHYRM	H3GWX4	H3GWN9	Uncharacterized protein.	Uncharacterized protein.	0.826

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