(23 nodes) SNF2-like, N-terminal domain superfamily network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GEV6_PHYRM	Uncharacterized protein. (1275 aa)
	H3GGI0_PHYRM	Uncharacterized protein. (909 aa)
	H3GJ31_PHYRM	Uncharacterized protein. (2159 aa)
	H3GQ59_PHYRM	Uncharacterized protein. (712 aa)
	H3GQ72_PHYRM	Uncharacterized protein. (768 aa)
	H3GRS2_PHYRM	Uncharacterized protein. (1068 aa)
	H3GSL8_PHYRM	Uncharacterized protein. (1128 aa)
	H3GT70_PHYRM	Uncharacterized protein. (1212 aa)
	H3GTE0_PHYRM	Uncharacterized protein. (1896 aa)
	H3GTJ9_PHYRM	Uncharacterized protein. (1398 aa)
	H3GUQ8_PHYRM	Uncharacterized protein. (2572 aa)
	H3GW83_PHYRM	Uncharacterized protein. (966 aa)
	H3G7F5_PHYRM	Uncharacterized protein. (767 aa)
	H3G746_PHYRM	Uncharacterized protein. (626 aa)
	H3G6X2_PHYRM	Uncharacterized protein. (864 aa)
	H3G4Y9_PHYRM	Uncharacterized protein. (569 aa)
	H3H7T6_PHYRM	Uncharacterized protein. (697 aa)
	H3HCY4_PHYRM	Uncharacterized protein. (1464 aa)
	H3HD47_PHYRM	Uncharacterized protein. (1239 aa)
	H3HDF9_PHYRM	Uncharacterized protein. (812 aa)
	H3HDT6_PHYRM	Uncharacterized protein. (1418 aa)
	H3GDU3_PHYRM	Uncharacterized protein. (1909 aa)
	H3G8T0_PHYRM	Uncharacterized protein. (757 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G4Y9_PHYRM	H3G746_PHYRM	H3G4Y9	H3G746	Uncharacterized protein.	Uncharacterized protein.	0.412
H3G4Y9_PHYRM	H3GDU3_PHYRM	H3G4Y9	H3GDU3	Uncharacterized protein.	Uncharacterized protein.	0.667
H3G4Y9_PHYRM	H3GQ59_PHYRM	H3G4Y9	H3GQ59	Uncharacterized protein.	Uncharacterized protein.	0.694
H3G4Y9_PHYRM	H3GRS2_PHYRM	H3G4Y9	H3GRS2	Uncharacterized protein.	Uncharacterized protein.	0.757
H3G4Y9_PHYRM	H3GW83_PHYRM	H3G4Y9	H3GW83	Uncharacterized protein.	Uncharacterized protein.	0.466
H3G6X2_PHYRM	H3GDU3_PHYRM	H3G6X2	H3GDU3	Uncharacterized protein.	Uncharacterized protein.	0.435
H3G6X2_PHYRM	H3GRS2_PHYRM	H3G6X2	H3GRS2	Uncharacterized protein.	Uncharacterized protein.	0.454
H3G6X2_PHYRM	H3GT70_PHYRM	H3G6X2	H3GT70	Uncharacterized protein.	Uncharacterized protein.	0.436
H3G6X2_PHYRM	H3H7T6_PHYRM	H3G6X2	H3H7T6	Uncharacterized protein.	Uncharacterized protein.	0.412
H3G6X2_PHYRM	H3HD47_PHYRM	H3G6X2	H3HD47	Uncharacterized protein.	Uncharacterized protein.	0.409
H3G6X2_PHYRM	H3HDF9_PHYRM	H3G6X2	H3HDF9	Uncharacterized protein.	Uncharacterized protein.	0.438
H3G746_PHYRM	H3G4Y9_PHYRM	H3G746	H3G4Y9	Uncharacterized protein.	Uncharacterized protein.	0.412
H3G746_PHYRM	H3G7F5_PHYRM	H3G746	H3G7F5	Uncharacterized protein.	Uncharacterized protein.	0.423
H3G746_PHYRM	H3GDU3_PHYRM	H3G746	H3GDU3	Uncharacterized protein.	Uncharacterized protein.	0.461
H3G746_PHYRM	H3GEV6_PHYRM	H3G746	H3GEV6	Uncharacterized protein.	Uncharacterized protein.	0.405
H3G746_PHYRM	H3GJ31_PHYRM	H3G746	H3GJ31	Uncharacterized protein.	Uncharacterized protein.	0.403
H3G746_PHYRM	H3GQ72_PHYRM	H3G746	H3GQ72	Uncharacterized protein.	Uncharacterized protein.	0.406
H3G746_PHYRM	H3GRS2_PHYRM	H3G746	H3GRS2	Uncharacterized protein.	Uncharacterized protein.	0.465
H3G746_PHYRM	H3GSL8_PHYRM	H3G746	H3GSL8	Uncharacterized protein.	Uncharacterized protein.	0.405
H3G746_PHYRM	H3GT70_PHYRM	H3G746	H3GT70	Uncharacterized protein.	Uncharacterized protein.	0.436

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