STRINGSTRING
LSM3 LSM3 H3G5B7_PHYRM H3G5B7_PHYRM LSM4 LSM4 LSM5 LSM5 H3G8P4_PHYRM H3G8P4_PHYRM H3G919_PHYRM H3G919_PHYRM H3G996_PHYRM H3G996_PHYRM H3GFP6_PHYRM H3GFP6_PHYRM LSM1 LSM1 H3GLK3_PHYRM H3GLK3_PHYRM H3GNM1_PHYRM H3GNM1_PHYRM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
H3G5B7_PHYRMU6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (118 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (67 aa)
H3G8P4_PHYRMSm domain-containing protein. (105 aa)
H3G919_PHYRMSm domain-containing protein. (84 aa)
H3G996_PHYRMUncharacterized protein; Belongs to the DEAD box helicase family. (410 aa)
H3GFP6_PHYRMmRNA_decap_C domain-containing protein. (319 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (122 aa)
H3GLK3_PHYRMMoCF_biosynth domain-containing protein. (1405 aa)
H3GNM1_PHYRMNudix hydrolase domain-containing protein. (429 aa)
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.