(45 nodes) Gap-filling DNA repair synthesis and ligation in TC-NER network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3HDF9_PHYRM	Uncharacterized protein. (812 aa)
	H3G548_PHYRM	Uncharacterized protein. (114 aa)
	H3G5L6_PHYRM	Uncharacterized protein. (44 aa)
	H3G5M2_PHYRM	AAA domain-containing protein. (332 aa)
	H3G601_PHYRM	General transcription factor IIH subunit. (376 aa)
	H3G809_PHYRM	Uncharacterized protein. (64 aa)
	H3G846_PHYRM	TFIIS-type domain-containing protein. (40 aa)
	H3G8B8_PHYRM	AAA domain-containing protein. (327 aa)
	H3G8C6_PHYRM	Helicase ATP-binding domain-containing protein. (781 aa)
	H3G8E6_PHYRM	CPSF_A domain-containing protein. (1075 aa)
	H3G8T3_PHYRM	AAA domain-containing protein. (353 aa)
	H3G8T9_PHYRM	Ubiquitin-like domain-containing protein. (164 aa)
	H3G975_PHYRM	CULLIN_2 domain-containing protein; Belongs to the cullin family. (751 aa)
	H3G9H3_PHYRM	Suf domain-containing protein. (864 aa)
	H3G9U4_PHYRM	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
	H3HDK0_PHYRM	Uncharacterized protein. (206 aa)
	H3GA07_PHYRM	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1298 aa)
	H3GA26_PHYRM	RNA_pol_L_2 domain-containing protein. (119 aa)
	H3GAE9_PHYRM	WD_REPEATS_REGION domain-containing protein. (519 aa)
	H3GAJ2_PHYRM	Uncharacterized protein. (352 aa)
	H3GAU9_PHYRM	Uncharacterized protein. (793 aa)
	H3GBC5_PHYRM	Uncharacterized protein. (298 aa)
	H3GBD3_PHYRM	CYCLIN domain-containing protein; Belongs to the cyclin family. (401 aa)
	H3GCB9_PHYRM	Replication protein A subunit. (622 aa)
	H3GH16_PHYRM	Uncharacterized protein. (658 aa)
	H3GH86_PHYRM	UmuC domain-containing protein. (675 aa)
	H3GHD4_PHYRM	RPOL4c domain-containing protein. (155 aa)
	H3GI13_PHYRM	Uncharacterized protein. (177 aa)
	H3GJ64_PHYRM	RRM domain-containing protein. (122 aa)
	H3GK19_PHYRM	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (667 aa)
	H3GL42_PHYRM	Uncharacterized protein. (146 aa)
	H3GLZ6_PHYRM	RING-type domain-containing protein. (314 aa)
	H3GMV0_PHYRM	RPOLD domain-containing protein. (327 aa)
	H3GP75_PHYRM	Uncharacterized protein. (1448 aa)
	H3GPB1_PHYRM	Uncharacterized protein. (209 aa)
	H3GR64_PHYRM	Uncharacterized protein. (495 aa)
	H3GU43_PHYRM	Uncharacterized protein. (442 aa)
	H3GUR6_PHYRM	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (492 aa)
	H3GV69_PHYRM	Uncharacterized protein. (439 aa)
	H3GWA8_PHYRM	Replication factor C subunit 1. (850 aa)
	H3GYW5_PHYRM	Uncharacterized protein. (306 aa)
	H3H702_PHYRM	TFIIS central domain-containing protein. (311 aa)
	H3HBL2_PHYRM	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (142 aa)
	H3HD47_PHYRM	Uncharacterized protein. (1239 aa)
	H3HDA4_PHYRM	BSD domain-containing protein. (496 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G548_PHYRM	H3G5L6_PHYRM	H3G548	H3G5L6	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3G601_PHYRM	H3G548	H3G601	Uncharacterized protein.	General transcription factor IIH subunit.	0.969
H3G548_PHYRM	H3G809_PHYRM	H3G548	H3G809	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3G846_PHYRM	H3G548	H3G846	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.954
H3G548_PHYRM	H3G8C6_PHYRM	H3G548	H3G8C6	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.971
H3G548_PHYRM	H3G8E6_PHYRM	H3G548	H3G8E6	Uncharacterized protein.	CPSF_A domain-containing protein.	0.912
H3G548_PHYRM	H3G8T9_PHYRM	H3G548	H3G8T9	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.708
H3G548_PHYRM	H3G975_PHYRM	H3G548	H3G975	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.855
H3G548_PHYRM	H3G9H3_PHYRM	H3G548	H3G9H3	Uncharacterized protein.	Suf domain-containing protein.	0.542
H3G548_PHYRM	H3GA07_PHYRM	H3G548	H3GA07	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
H3G548_PHYRM	H3GA26_PHYRM	H3G548	H3GA26	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
H3G548_PHYRM	H3GAE9_PHYRM	H3G548	H3GAE9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.503
H3G548_PHYRM	H3GAU9_PHYRM	H3G548	H3GAU9	Uncharacterized protein.	Uncharacterized protein.	0.971
H3G548_PHYRM	H3GBC5_PHYRM	H3G548	H3GBC5	Uncharacterized protein.	Uncharacterized protein.	0.974
H3G548_PHYRM	H3GBD3_PHYRM	H3G548	H3GBD3	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.942
H3G548_PHYRM	H3GHD4_PHYRM	H3G548	H3GHD4	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
H3G548_PHYRM	H3GI13_PHYRM	H3G548	H3GI13	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3GK19_PHYRM	H3G548	H3GK19	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.990
H3G548_PHYRM	H3GL42_PHYRM	H3G548	H3GL42	Uncharacterized protein.	Uncharacterized protein.	0.505
H3G548_PHYRM	H3GLZ6_PHYRM	H3G548	H3GLZ6	Uncharacterized protein.	RING-type domain-containing protein.	0.971

page 1 of 59

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About