(15 nodes) Lysine catabolism network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GAB7_PHYRM	Transket_pyr domain-containing protein. (1020 aa)
	H3G6Q4_PHYRM	Uncharacterized protein. (481 aa)
	H3G9H5_PHYRM	Uncharacterized protein. (398 aa)
	H3G9Z0_PHYRM	Uncharacterized protein. (1015 aa)
	H3HCV2_PHYRM	Aminotran_1_2 domain-containing protein. (404 aa)
	H3G6Y6_PHYRM	Uncharacterized protein. (462 aa)
	H3G7C9_PHYRM	Transket_pyr domain-containing protein. (874 aa)
	H3G893_PHYRM	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (510 aa)
	H3GZV6_PHYRM	Uncharacterized protein. (1057 aa)
	H3GQ69_PHYRM	Uncharacterized protein. (420 aa)
	H3GHZ9_PHYRM	DAO domain-containing protein. (400 aa)
	H3GHJ1_PHYRM	Uncharacterized protein. (113 aa)
	H3GGS9_PHYRM	Uncharacterized protein. (637 aa)
	H3GE36_PHYRM	Uncharacterized protein. (551 aa)
	H3GAL9_PHYRM	Dihydrolipoyl dehydrogenase. (499 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G6Q4_PHYRM	H3G6Y6_PHYRM	H3G6Q4	H3G6Y6	Uncharacterized protein.	Uncharacterized protein.	0.962
H3G6Q4_PHYRM	H3G7C9_PHYRM	H3G6Q4	H3G7C9	Uncharacterized protein.	Transket_pyr domain-containing protein.	0.903
H3G6Q4_PHYRM	H3G9H5_PHYRM	H3G6Q4	H3G9H5	Uncharacterized protein.	Uncharacterized protein.	0.552
H3G6Q4_PHYRM	H3GAB7_PHYRM	H3G6Q4	H3GAB7	Uncharacterized protein.	Transket_pyr domain-containing protein.	0.903
H3G6Q4_PHYRM	H3GGS9_PHYRM	H3G6Q4	H3GGS9	Uncharacterized protein.	Uncharacterized protein.	0.499
H3G6Q4_PHYRM	H3GHJ1_PHYRM	H3G6Q4	H3GHJ1	Uncharacterized protein.	Uncharacterized protein.	0.903
H3G6Q4_PHYRM	H3GHZ9_PHYRM	H3G6Q4	H3GHZ9	Uncharacterized protein.	DAO domain-containing protein.	0.599
H3G6Q4_PHYRM	H3GQ69_PHYRM	H3G6Q4	H3GQ69	Uncharacterized protein.	Uncharacterized protein.	0.552
H3G6Q4_PHYRM	H3GZV6_PHYRM	H3G6Q4	H3GZV6	Uncharacterized protein.	Uncharacterized protein.	0.960
H3G6Q4_PHYRM	H3HCV2_PHYRM	H3G6Q4	H3HCV2	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.499
H3G6Y6_PHYRM	H3G6Q4_PHYRM	H3G6Y6	H3G6Q4	Uncharacterized protein.	Uncharacterized protein.	0.962
H3G6Y6_PHYRM	H3G7C9_PHYRM	H3G6Y6	H3G7C9	Uncharacterized protein.	Transket_pyr domain-containing protein.	0.999
H3G6Y6_PHYRM	H3G893_PHYRM	H3G6Y6	H3G893	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.491
H3G6Y6_PHYRM	H3G9H5_PHYRM	H3G6Y6	H3G9H5	Uncharacterized protein.	Uncharacterized protein.	0.894
H3G6Y6_PHYRM	H3GAB7_PHYRM	H3G6Y6	H3GAB7	Uncharacterized protein.	Transket_pyr domain-containing protein.	0.998
H3G6Y6_PHYRM	H3GAL9_PHYRM	H3G6Y6	H3GAL9	Uncharacterized protein.	Dihydrolipoyl dehydrogenase.	0.997
H3G6Y6_PHYRM	H3GE36_PHYRM	H3G6Y6	H3GE36	Uncharacterized protein.	Uncharacterized protein.	0.960
H3G6Y6_PHYRM	H3GHJ1_PHYRM	H3G6Y6	H3GHJ1	Uncharacterized protein.	Uncharacterized protein.	0.992
H3G6Y6_PHYRM	H3GQ69_PHYRM	H3G6Y6	H3GQ69	Uncharacterized protein.	Uncharacterized protein.	0.894
H3G7C9_PHYRM	H3G6Q4_PHYRM	H3G7C9	H3G6Q4	Transket_pyr domain-containing protein.	Uncharacterized protein.	0.903

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