(28 nodes) RNA Polymerase I Promoter Clearance network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GBD3_PHYRM	CYCLIN domain-containing protein; Belongs to the cyclin family. (401 aa)
	H3GG85_PHYRM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
	H3GGU1_PHYRM	SHS2_Rpb7-N domain-containing protein. (297 aa)
	H3GH54_PHYRM	Nitroreductase domain-containing protein. (223 aa)
	H3HDA4_PHYRM	BSD domain-containing protein. (496 aa)
	H3HBL2_PHYRM	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (142 aa)
	H3H3C0_PHYRM	Uncharacterized protein. (442 aa)
	H3H3B9_PHYRM	Uncharacterized protein. (225 aa)
	H3H1S7_PHYRM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1800 aa)
	H3GYT5_PHYRM	Uncharacterized protein. (661 aa)
	H3GV90_PHYRM	RPOLD domain-containing protein. (376 aa)
	H3G548_PHYRM	Uncharacterized protein. (114 aa)
	H3G5L6_PHYRM	Uncharacterized protein. (44 aa)
	H3G5P5_PHYRM	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1145 aa)
	H3GH55_PHYRM	Nitroreductase domain-containing protein. (281 aa)
	H3GLZ6_PHYRM	RING-type domain-containing protein. (314 aa)
	H3GP02_PHYRM	Uncharacterized protein. (429 aa)
	H3GUR6_PHYRM	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (492 aa)
	H3G601_PHYRM	General transcription factor IIH subunit. (376 aa)
	H3G670_PHYRM	Uncharacterized protein. (173 aa)
	H3G6B8_PHYRM	Uncharacterized protein. (155 aa)
	H3G809_PHYRM	Uncharacterized protein. (64 aa)
	H3G8C6_PHYRM	Helicase ATP-binding domain-containing protein. (781 aa)
	H3G9Z2_PHYRM	Histone H2B; Belongs to the histone H2B family. (115 aa)
	H3GA01_PHYRM	Histone H2B; Belongs to the histone H2B family. (117 aa)
	H3GAU9_PHYRM	Uncharacterized protein. (793 aa)
	H3GBC5_PHYRM	Uncharacterized protein. (298 aa)
	H3HDK0_PHYRM	Uncharacterized protein. (206 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G548_PHYRM	H3G5L6_PHYRM	H3G548	H3G5L6	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3G5P5_PHYRM	H3G548	H3G5P5	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H3G548_PHYRM	H3G601_PHYRM	H3G548	H3G601	Uncharacterized protein.	General transcription factor IIH subunit.	0.969
H3G548_PHYRM	H3G670_PHYRM	H3G548	H3G670	Uncharacterized protein.	Uncharacterized protein.	0.910
H3G548_PHYRM	H3G6B8_PHYRM	H3G548	H3G6B8	Uncharacterized protein.	Uncharacterized protein.	0.910
H3G548_PHYRM	H3G809_PHYRM	H3G548	H3G809	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3G8C6_PHYRM	H3G548	H3G8C6	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.971
H3G548_PHYRM	H3G9Z2_PHYRM	H3G548	H3G9Z2	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.866
H3G548_PHYRM	H3GA01_PHYRM	H3G548	H3GA01	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.866
H3G548_PHYRM	H3GAU9_PHYRM	H3G548	H3GAU9	Uncharacterized protein.	Uncharacterized protein.	0.971
H3G548_PHYRM	H3GBC5_PHYRM	H3G548	H3GBC5	Uncharacterized protein.	Uncharacterized protein.	0.974
H3G548_PHYRM	H3GBD3_PHYRM	H3G548	H3GBD3	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.942
H3G548_PHYRM	H3GG85_PHYRM	H3G548	H3GG85	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
H3G548_PHYRM	H3GGU1_PHYRM	H3G548	H3GGU1	Uncharacterized protein.	SHS2_Rpb7-N domain-containing protein.	0.967
H3G548_PHYRM	H3GH54_PHYRM	H3G548	H3GH54	Uncharacterized protein.	Nitroreductase domain-containing protein.	0.967
H3G548_PHYRM	H3GH55_PHYRM	H3G548	H3GH55	Uncharacterized protein.	Nitroreductase domain-containing protein.	0.967
H3G548_PHYRM	H3GLZ6_PHYRM	H3G548	H3GLZ6	Uncharacterized protein.	RING-type domain-containing protein.	0.971
H3G548_PHYRM	H3GP02_PHYRM	H3G548	H3GP02	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3GUR6_PHYRM	H3G548	H3GUR6	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.970
H3G548_PHYRM	H3GV90_PHYRM	H3G548	H3GV90	Uncharacterized protein.	RPOLD domain-containing protein.	0.999

page 1 of 33

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About