(49 nodes) RNA Polymerase II Transcription Elongation network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GMP6_PHYRM	Uncharacterized protein. (898 aa)
	H3GLZ6_PHYRM	RING-type domain-containing protein. (314 aa)
	H3GJ63_PHYRM	Uncharacterized protein. (1061 aa)
	H3GJ62_PHYRM	Uncharacterized protein. (1164 aa)
	H3GJ50_PHYRM	Uncharacterized protein. (478 aa)
	H3GI13_PHYRM	Uncharacterized protein. (177 aa)
	H3GHD4_PHYRM	RPOL4c domain-containing protein. (155 aa)
	H3GGY1_PHYRM	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (105 aa)
	H3GEI9_PHYRM	Guanylate cyclase domain-containing protein. (1352 aa)
	H3GEH1_PHYRM	Uncharacterized protein. (1079 aa)
	H3GKS2_PHYRM	Spt4 domain-containing protein. (126 aa)
	H3GCM4_PHYRM	Uncharacterized protein. (1535 aa)
	H3GCB7_PHYRM	Transcription elongation factor SPT5. (1101 aa)
	H3GBU6_PHYRM	EAF domain-containing protein. (233 aa)
	H3GBD5_PHYRM	Uncharacterized protein. (403 aa)
	H3GBD3_PHYRM	CYCLIN domain-containing protein; Belongs to the cyclin family. (401 aa)
	H3GBC5_PHYRM	Uncharacterized protein. (298 aa)
	H3GAU9_PHYRM	Uncharacterized protein. (793 aa)
	H3GA26_PHYRM	RNA_pol_L_2 domain-containing protein. (119 aa)
	H3GA07_PHYRM	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1298 aa)
	H3G8C6_PHYRM	Helicase ATP-binding domain-containing protein. (781 aa)
	H3G846_PHYRM	TFIIS-type domain-containing protein. (40 aa)
	H3G809_PHYRM	Uncharacterized protein. (64 aa)
	H3G6M7_PHYRM	Nuclear cap-binding protein subunit 2. (121 aa)
	H3G601_PHYRM	General transcription factor IIH subunit. (376 aa)
	H3G5L6_PHYRM	Uncharacterized protein. (44 aa)
	H3G548_PHYRM	Uncharacterized protein. (114 aa)
	H3GKA5_PHYRM	Plus3 domain-containing protein. (756 aa)
	H3GK19_PHYRM	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (667 aa)
	H3GMV0_PHYRM	RPOLD domain-containing protein. (327 aa)
	H3HE87_PHYRM	Cyclin N-terminal domain-containing protein. (1249 aa)
	H3HDK0_PHYRM	Uncharacterized protein. (206 aa)
	H3HDA4_PHYRM	BSD domain-containing protein. (496 aa)
	H3HBL2_PHYRM	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (142 aa)
	H3HAD5_PHYRM	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (424 aa)
	H3H8S9_PHYRM	Uncharacterized protein. (268 aa)
	H3H702_PHYRM	TFIIS central domain-containing protein. (311 aa)
	H3H4I1_PHYRM	CYCLIN domain-containing protein; Belongs to the cyclin family. (408 aa)
	H3GZK0_PHYRM	Uncharacterized protein. (464 aa)
	H3GYW5_PHYRM	Uncharacterized protein. (306 aa)
	H3GXI3_PHYRM	Uncharacterized protein. (665 aa)
	H3GWT7_PHYRM	TFIIS N-terminal domain-containing protein. (515 aa)
	H3GWG6_PHYRM	Cyclin N-terminal domain-containing protein. (388 aa)
	H3GV77_PHYRM	Cyclin N-terminal domain-containing protein. (389 aa)
	H3GUU8_PHYRM	Uncharacterized protein. (116 aa)
	H3GUR6_PHYRM	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (492 aa)
	H3GT06_PHYRM	Uncharacterized protein. (249 aa)
	H3GSQ2_PHYRM	TFIIS N-terminal domain-containing protein. (1164 aa)
	H3GQ97_PHYRM	Peptidase_M14 domain-containing protein. (1449 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G548_PHYRM	H3G5L6_PHYRM	H3G548	H3G5L6	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3G601_PHYRM	H3G548	H3G601	Uncharacterized protein.	General transcription factor IIH subunit.	0.969
H3G548_PHYRM	H3G809_PHYRM	H3G548	H3G809	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3G846_PHYRM	H3G548	H3G846	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.954
H3G548_PHYRM	H3G8C6_PHYRM	H3G548	H3G8C6	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.971
H3G548_PHYRM	H3GA07_PHYRM	H3G548	H3GA07	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
H3G548_PHYRM	H3GA26_PHYRM	H3G548	H3GA26	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
H3G548_PHYRM	H3GAU9_PHYRM	H3G548	H3GAU9	Uncharacterized protein.	Uncharacterized protein.	0.971
H3G548_PHYRM	H3GBC5_PHYRM	H3G548	H3GBC5	Uncharacterized protein.	Uncharacterized protein.	0.974
H3G548_PHYRM	H3GBD3_PHYRM	H3G548	H3GBD3	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.942
H3G548_PHYRM	H3GBD5_PHYRM	H3G548	H3GBD5	Uncharacterized protein.	Uncharacterized protein.	0.914
H3G548_PHYRM	H3GBU6_PHYRM	H3G548	H3GBU6	Uncharacterized protein.	EAF domain-containing protein.	0.854
H3G548_PHYRM	H3GCB7_PHYRM	H3G548	H3GCB7	Uncharacterized protein.	Transcription elongation factor SPT5.	0.914
H3G548_PHYRM	H3GCM4_PHYRM	H3G548	H3GCM4	Uncharacterized protein.	Uncharacterized protein.	0.936
H3G548_PHYRM	H3GEH1_PHYRM	H3G548	H3GEH1	Uncharacterized protein.	Uncharacterized protein.	0.970
H3G548_PHYRM	H3GEI9_PHYRM	H3G548	H3GEI9	Uncharacterized protein.	Guanylate cyclase domain-containing protein.	0.934
H3G548_PHYRM	H3GHD4_PHYRM	H3G548	H3GHD4	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
H3G548_PHYRM	H3GI13_PHYRM	H3G548	H3GI13	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3GJ50_PHYRM	H3G548	H3GJ50	Uncharacterized protein.	Uncharacterized protein.	0.920
H3G548_PHYRM	H3GJ62_PHYRM	H3G548	H3GJ62	Uncharacterized protein.	Uncharacterized protein.	0.909

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