(32 nodes) Regulation of NF-kappa B signaling network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GGW3_PHYRM	Uncharacterized protein. (467 aa)
	H3GFK2_PHYRM	Uncharacterized protein. (1497 aa)
	H3GES3_PHYRM	Uncharacterized protein. (436 aa)
	H3GLB3_PHYRM	Uncharacterized protein. (431 aa)
	H3GLX1_PHYRM	ANK_REP_REGION domain-containing protein. (1145 aa)
	H3GM77_PHYRM	Uncharacterized protein. (234 aa)
	H3GNC0_PHYRM	Uncharacterized protein. (540 aa)
	H3GNV7_PHYRM	Uncharacterized protein. (174 aa)
	H3GRM5_PHYRM	Uncharacterized protein. (408 aa)
	H3GUB4_PHYRM	Uncharacterized protein. (686 aa)
	H3GUD7_PHYRM	Uncharacterized protein. (274 aa)
	H3GCU2_PHYRM	Uncharacterized protein. (420 aa)
	H3GBX3_PHYRM	Uncharacterized protein. (199 aa)
	H3GIF9_PHYRM	Uncharacterized protein. (460 aa)
	H3G8T9_PHYRM	Ubiquitin-like domain-containing protein. (164 aa)
	H3GIN7_PHYRM	Uncharacterized protein. (1295 aa)
	H3HCW9_PHYRM	Uncharacterized protein. (663 aa)
	H3HBW5_PHYRM	Uncharacterized protein. (588 aa)
	H3HBQ6_PHYRM	Uncharacterized protein. (445 aa)
	H3HBF1_PHYRM	Uncharacterized protein. (267 aa)
	H3GZN4_PHYRM	DUF4203 domain-containing protein. (567 aa)
	H3GZB5_PHYRM	Uncharacterized protein. (292 aa)
	H3GYW0_PHYRM	Uncharacterized protein. (151 aa)
	H3GWU8_PHYRM	Uncharacterized protein. (327 aa)
	H3GW57_PHYRM	Uncharacterized protein. (469 aa)
	H3GJ95_PHYRM	Uncharacterized protein. (730 aa)
	H3GJQ8_PHYRM	Uncharacterized protein. (1022 aa)
	H3GEF7_PHYRM	Uncharacterized protein. (490 aa)
	H3GDY2_PHYRM	Uncharacterized protein. (255 aa)
	H3GID7_PHYRM	Uncharacterized protein. (565 aa)
	H3GID6_PHYRM	Uncharacterized protein. (172 aa)
	H3GGW4_PHYRM	Uncharacterized protein. (541 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G8T9_PHYRM	H3GCU2_PHYRM	H3G8T9	H3GCU2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GDY2_PHYRM	H3G8T9	H3GDY2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GEF7_PHYRM	H3G8T9	H3GEF7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GES3_PHYRM	H3G8T9	H3GES3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GFK2_PHYRM	H3G8T9	H3GFK2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GGW3_PHYRM	H3G8T9	H3GGW3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GGW4_PHYRM	H3G8T9	H3GGW4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GIN7_PHYRM	H3G8T9	H3GIN7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GJ95_PHYRM	H3G8T9	H3GJ95	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GJQ8_PHYRM	H3G8T9	H3GJQ8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GLB3_PHYRM	H3G8T9	H3GLB3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GLX1_PHYRM	H3G8T9	H3GLX1	Ubiquitin-like domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.828
H3G8T9_PHYRM	H3GM77_PHYRM	H3G8T9	H3GM77	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GNC0_PHYRM	H3G8T9	H3GNC0	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GRM5_PHYRM	H3G8T9	H3GRM5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GUB4_PHYRM	H3G8T9	H3GUB4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GUD7_PHYRM	H3G8T9	H3GUD7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GW57_PHYRM	H3G8T9	H3GW57	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GWU8_PHYRM	H3G8T9	H3GWU8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587
H3G8T9_PHYRM	H3GZB5_PHYRM	H3G8T9	H3GZB5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.587

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