(104 nodes) Pentose and glucuronate interconversions network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G8H4_PHYRM	Pectinesterase. (315 aa)
	H3G8N2_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (308 aa)
	H3G8W2_PHYRM	UDP-glucose 6-dehydrogenase. (470 aa)
	H3G929_PHYRM	ADH_N domain-containing protein. (397 aa)
	H3G998_PHYRM	PKS_ER domain-containing protein. (353 aa)
	H3G9A0_PHYRM	PKS_ER domain-containing protein. (353 aa)
	H3G9Q0_PHYRM	Uncharacterized protein. (231 aa)
	H3G9S9_PHYRM	Pectinesterase. (348 aa)
	H3G9U2_PHYRM	GFO_IDH_MocA domain-containing protein. (345 aa)
	H3GA14_PHYRM	PKS_ER domain-containing protein. (353 aa)
	H3GA63_PHYRM	Xylose isomerase. (452 aa)
	H3GA77_PHYRM	Pectinesterase. (343 aa)
	H3GAF0_PHYRM	Uncharacterized protein. (367 aa)
	H3GAF1_PHYRM	Uncharacterized protein. (381 aa)
	H3GAF2_PHYRM	Uncharacterized protein. (382 aa)
	H3GAF3_PHYRM	Uncharacterized protein. (361 aa)
	H3GAF4_PHYRM	Uncharacterized protein. (361 aa)
	H3GGH7_PHYRM	Uncharacterized protein. (497 aa)
	H3GAK2_PHYRM	Pectinesterase. (343 aa)
	H3GAR5_PHYRM	PKS_ER domain-containing protein. (353 aa)
	H3GAR6_PHYRM	PKS_ER domain-containing protein. (361 aa)
	H3GAV7_PHYRM	PKS_ER domain-containing protein. (353 aa)
	H3GVP2_PHYRM	Uncharacterized protein. (681 aa)
	H3GS17_PHYRM	Pectinesterase. (348 aa)
	H3GAW0_PHYRM	Pectinesterase. (320 aa)
	H3GAZ4_PHYRM	PKS_ER domain-containing protein. (355 aa)
	H3GB67_PHYRM	Pectinesterase domain-containing protein. (348 aa)
	H3GBQ6_PHYRM	Uncharacterized protein. (554 aa)
	H3GBU0_PHYRM	Uncharacterized protein. (755 aa)
	H3GC58_PHYRM	Uncharacterized protein; Belongs to the RNase T2 family. (312 aa)
	H3GCY4_PHYRM	PKS_ER domain-containing protein. (353 aa)
	H3GD58_PHYRM	Uncharacterized protein. (548 aa)
	H3GF21_PHYRM	Uncharacterized protein. (1059 aa)
	H3GF23_PHYRM	Uncharacterized protein. (1242 aa)
	H3GFC2_PHYRM	Pectinesterase. (343 aa)
	H3GUI8_PHYRM	GFO_IDH_MocA domain-containing protein. (352 aa)
	H3H390_PHYRM	Uncharacterized protein. (299 aa)
	H3H676_PHYRM	Uncharacterized protein. (628 aa)
	H3H7B0_PHYRM	Uncharacterized protein. (354 aa)
	H3H7E7_PHYRM	Uncharacterized protein. (105 aa)
	H3H7F3_PHYRM	Uncharacterized protein. (305 aa)
	H3H7K9_PHYRM	PKS_ER domain-containing protein. (354 aa)
	H3H7L0_PHYRM	PKS_ER domain-containing protein. (355 aa)
	H3H7Y1_PHYRM	Uncharacterized protein. (261 aa)
	H3H834_PHYRM	Uncharacterized protein. (642 aa)
	H3H990_PHYRM	Uncharacterized protein. (556 aa)
	H3HA90_PHYRM	ADH_zinc_N domain-containing protein. (235 aa)
	H3HA95_PHYRM	Pectinesterase. (275 aa)
	H3HAS6_PHYRM	Uncharacterized protein; Belongs to the RNase T2 family. (360 aa)
	H3HCQ6_PHYRM	Uncharacterized protein. (366 aa)
	H3GFE0_PHYRM	Uncharacterized protein. (471 aa)
	H3GAJ7_PHYRM	PKS_ER domain-containing protein. (354 aa)
	H3GGK9_PHYRM	Uncharacterized protein. (709 aa)
	H3GGP0_PHYRM	Uncharacterized protein. (262 aa)
	H3GI43_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (501 aa)
	H3GL15_PHYRM	Uncharacterized protein. (678 aa)
	H3GL17_PHYRM	Uncharacterized protein. (652 aa)
	H3GL21_PHYRM	Uncharacterized protein. (242 aa)
	H3GMM7_PHYRM	ADH_zinc_N domain-containing protein. (240 aa)
	H3GMM9_PHYRM	ADH_zinc_N domain-containing protein. (238 aa)
	H3GNX7_PHYRM	Uncharacterized protein; Belongs to the RNase T2 family. (246 aa)
	H3GP88_PHYRM	Uncharacterized protein. (526 aa)
	H3GQB6_PHYRM	Uncharacterized protein. (285 aa)
	H3GQB8_PHYRM	Uncharacterized protein. (288 aa)
	H3GR32_PHYRM	Uncharacterized protein; Belongs to the RNase T2 family. (345 aa)
	H3GR45_PHYRM	Uncharacterized protein. (740 aa)
	H3GRJ2_PHYRM	TPR_REGION domain-containing protein. (406 aa)
	H3GUI7_PHYRM	Uncharacterized protein. (678 aa)
	H3GSV8_PHYRM	Uncharacterized protein. (261 aa)
	H3GSE2_PHYRM	ADH_zinc_N domain-containing protein. (305 aa)
	H3H369_PHYRM	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). (443 aa)
	H3H2R6_PHYRM	Uncharacterized protein. (349 aa)
	H3H0A4_PHYRM	Uncharacterized protein. (349 aa)
	H3H0A2_PHYRM	Uncharacterized protein. (161 aa)
	H3H0A1_PHYRM	Uncharacterized protein. (372 aa)
	H3H0A0_PHYRM	Uncharacterized protein. (362 aa)
	H3H099_PHYRM	Uncharacterized protein. (362 aa)
	H3H098_PHYRM	Uncharacterized protein. (390 aa)
	H3H022_PHYRM	Uncharacterized protein. (206 aa)
	H3GS89_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (296 aa)
	H3GY75_PHYRM	Uncharacterized protein. (871 aa)
	H3GY52_PHYRM	Uncharacterized protein. (282 aa)
	H3GY48_PHYRM	Uncharacterized protein. (281 aa)
	H3GXF8_PHYRM	Uncharacterized protein. (125 aa)
	H3GWR2_PHYRM	Pectinesterase. (344 aa)
	H3G756_PHYRM	Uncharacterized protein. (395 aa)
	H3G706_PHYRM	Uncharacterized protein. (330 aa)
	H3G6Z6_PHYRM	Uncharacterized protein. (331 aa)
	H3G6J3_PHYRM	ADH_N domain-containing protein. (191 aa)
	H3G6H8_PHYRM	Uncharacterized protein. (226 aa)
	H3G648_PHYRM	Uncharacterized protein. (223 aa)
	H3G644_PHYRM	Uncharacterized protein. (180 aa)
	H3G640_PHYRM	Uncharacterized protein. (226 aa)
	H3G5U6_PHYRM	Uncharacterized protein. (218 aa)
	H3G5R7_PHYRM	Uncharacterized protein. (68 aa)
	H3G5I5_PHYRM	Uncharacterized protein. (343 aa)
	H3G5C2_PHYRM	Uncharacterized protein. (332 aa)
	H3G566_PHYRM	Uncharacterized protein. (561 aa)
	H3G544_PHYRM	Uncharacterized protein. (253 aa)
	H3G4Z6_PHYRM	Uncharacterized protein. (164 aa)
	H3G7N8_PHYRM	Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (212 aa)
	H3G816_PHYRM	Uncharacterized protein. (364 aa)
	H3G818_PHYRM	Uncharacterized protein. (330 aa)
	H3G858_PHYRM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (291 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5C2_PHYRM	H3G8H4_PHYRM	H3G5C2	H3G8H4	Uncharacterized protein.	Pectinesterase.	0.693
H3G5C2_PHYRM	H3G9Q0_PHYRM	H3G5C2	H3G9Q0	Uncharacterized protein.	Uncharacterized protein.	0.679
H3G5C2_PHYRM	H3G9S9_PHYRM	H3G5C2	H3G9S9	Uncharacterized protein.	Pectinesterase.	0.661
H3G5C2_PHYRM	H3GA77_PHYRM	H3G5C2	H3GA77	Uncharacterized protein.	Pectinesterase.	0.810
H3G5C2_PHYRM	H3GAF0_PHYRM	H3G5C2	H3GAF0	Uncharacterized protein.	Uncharacterized protein.	0.407
H3G5C2_PHYRM	H3GAK2_PHYRM	H3G5C2	H3GAK2	Uncharacterized protein.	Pectinesterase.	0.505
H3G5C2_PHYRM	H3GAW0_PHYRM	H3G5C2	H3GAW0	Uncharacterized protein.	Pectinesterase.	0.693
H3G5C2_PHYRM	H3GB67_PHYRM	H3G5C2	H3GB67	Uncharacterized protein.	Pectinesterase domain-containing protein.	0.661
H3G5C2_PHYRM	H3GFC2_PHYRM	H3G5C2	H3GFC2	Uncharacterized protein.	Pectinesterase.	0.693
H3G5C2_PHYRM	H3GS17_PHYRM	H3G5C2	H3GS17	Uncharacterized protein.	Pectinesterase.	0.505
H3G5C2_PHYRM	H3GSV8_PHYRM	H3G5C2	H3GSV8	Uncharacterized protein.	Uncharacterized protein.	0.679
H3G5C2_PHYRM	H3GWR2_PHYRM	H3G5C2	H3GWR2	Uncharacterized protein.	Pectinesterase.	0.824
H3G5C2_PHYRM	H3H098_PHYRM	H3G5C2	H3H098	Uncharacterized protein.	Uncharacterized protein.	0.407
H3G5C2_PHYRM	H3HA95_PHYRM	H3G5C2	H3HA95	Uncharacterized protein.	Pectinesterase.	0.661
H3G5I5_PHYRM	H3G8H4_PHYRM	H3G5I5	H3G8H4	Uncharacterized protein.	Pectinesterase.	0.449
H3G5I5_PHYRM	H3G9Q0_PHYRM	H3G5I5	H3G9Q0	Uncharacterized protein.	Uncharacterized protein.	0.445
H3G5I5_PHYRM	H3G9S9_PHYRM	H3G5I5	H3G9S9	Uncharacterized protein.	Pectinesterase.	0.430
H3G5I5_PHYRM	H3GA77_PHYRM	H3G5I5	H3GA77	Uncharacterized protein.	Pectinesterase.	0.487
H3G5I5_PHYRM	H3GAF0_PHYRM	H3G5I5	H3GAF0	Uncharacterized protein.	Uncharacterized protein.	0.406
H3G5I5_PHYRM	H3GAW0_PHYRM	H3G5I5	H3GAW0	Uncharacterized protein.	Pectinesterase.	0.449

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