53 items (Phytophthora ramorum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GEH7_PHYRM	Uncharacterized protein. (530 aa)
	H3HE36_PHYRM	Beta-galactosidase. (1028 aa)
	H3HDB8_PHYRM	PFK domain-containing protein. (486 aa)
	H3HD79_PHYRM	Uncharacterized protein. (1049 aa)
	H3HAN4_PHYRM	Uncharacterized protein. (1121 aa)
	H3H834_PHYRM	Uncharacterized protein. (642 aa)
	H3H7F3_PHYRM	Uncharacterized protein. (305 aa)
	H3H771_PHYRM	Uncharacterized protein. (440 aa)
	H3H758_PHYRM	Uncharacterized protein. (383 aa)
	H3H6N6_PHYRM	Uncharacterized protein. (132 aa)
	H3H6N4_PHYRM	Uncharacterized protein. (375 aa)
	H3H6N3_PHYRM	Uncharacterized protein. (232 aa)
	H3H6H8_PHYRM	Uncharacterized protein. (190 aa)
	H3H6H4_PHYRM	Uncharacterized protein. (278 aa)
	H3H4X2_PHYRM	Jacalin-type lectin domain-containing protein. (226 aa)
	H3H1M4_PHYRM	Uncharacterized protein. (164 aa)
	H3H0L5_PHYRM	Uncharacterized protein. (421 aa)
	H3H0G0_PHYRM	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (800 aa)
	H3H0A8_PHYRM	Uncharacterized protein. (603 aa)
	H3H0A6_PHYRM	Uncharacterized protein. (601 aa)
	H3GZ61_PHYRM	Uncharacterized protein. (401 aa)
	H3GY80_PHYRM	Uncharacterized protein. (692 aa)
	H3GY46_PHYRM	Uncharacterized protein; Belongs to the glycosyl hydrolase 32 family. (620 aa)
	H3GY45_PHYRM	Uncharacterized protein; Belongs to the glycosyl hydrolase 32 family. (619 aa)
	H3GY44_PHYRM	Uncharacterized protein; Belongs to the glycosyl hydrolase 32 family. (663 aa)
	H3GVY9_PHYRM	Uncharacterized protein. (340 aa)
	H3GR61_PHYRM	Uncharacterized protein. (533 aa)
	H3GNU8_PHYRM	Uncharacterized protein. (327 aa)
	H3GMA8_PHYRM	Uncharacterized protein. (177 aa)
	H3GKG8_PHYRM	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (875 aa)
	H3GKG6_PHYRM	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (1088 aa)
	H3GJB4_PHYRM	Uncharacterized protein. (1227 aa)
	H3GGW0_PHYRM	Uncharacterized protein. (561 aa)
	H3GEN7_PHYRM	Uncharacterized protein. (555 aa)
	H3GEK7_PHYRM	Uncharacterized protein. (626 aa)
	H3GEK6_PHYRM	Uncharacterized protein. (604 aa)
	H3GEK4_PHYRM	Uncharacterized protein. (590 aa)
	H3GEK2_PHYRM	Uncharacterized protein. (633 aa)
	H3GEK0_PHYRM	Uncharacterized protein. (470 aa)
	H3GEJ7_PHYRM	Uncharacterized protein. (616 aa)
	H3GEJ5_PHYRM	Uncharacterized protein. (591 aa)
	H3GEJ3_PHYRM	Uncharacterized protein. (619 aa)
	H3GEJ2_PHYRM	Uncharacterized protein. (594 aa)
	H3GEI7_PHYRM	Uncharacterized protein. (649 aa)
	H3GEI4_PHYRM	Uncharacterized protein. (649 aa)
	H3GBJ7_PHYRM	Jacalin-type lectin domain-containing protein. (679 aa)
	H3GBJ6_PHYRM	Jacalin-type lectin domain-containing protein. (677 aa)
	H3GB79_PHYRM	Uncharacterized protein. (421 aa)
	H3GAT0_PHYRM	Uncharacterized protein. (344 aa)
	H3GAH3_PHYRM	Uncharacterized protein. (421 aa)
	H3G9E8_PHYRM	Uncharacterized protein. (609 aa)
	H3G8R6_PHYRM	Uncharacterized protein. (330 aa)
	H3G756_PHYRM	Uncharacterized protein. (395 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G756_PHYRM	H3G8R6_PHYRM	H3G756	H3G8R6	Uncharacterized protein.	Uncharacterized protein.	0.905
H3G756_PHYRM	H3G9E8_PHYRM	H3G756	H3G9E8	Uncharacterized protein.	Uncharacterized protein.	0.945
H3G756_PHYRM	H3GAH3_PHYRM	H3G756	H3GAH3	Uncharacterized protein.	Uncharacterized protein.	0.618
H3G756_PHYRM	H3GB79_PHYRM	H3G756	H3GB79	Uncharacterized protein.	Uncharacterized protein.	0.618
H3G756_PHYRM	H3GY80_PHYRM	H3G756	H3GY80	Uncharacterized protein.	Uncharacterized protein.	0.623
H3G756_PHYRM	H3H0L5_PHYRM	H3G756	H3H0L5	Uncharacterized protein.	Uncharacterized protein.	0.618
H3G756_PHYRM	H3H6H4_PHYRM	H3G756	H3H6H4	Uncharacterized protein.	Uncharacterized protein.	0.618
H3G756_PHYRM	H3H7F3_PHYRM	H3G756	H3H7F3	Uncharacterized protein.	Uncharacterized protein.	0.896
H3G756_PHYRM	H3H834_PHYRM	H3G756	H3H834	Uncharacterized protein.	Uncharacterized protein.	0.896
H3G756_PHYRM	H3HD79_PHYRM	H3G756	H3HD79	Uncharacterized protein.	Uncharacterized protein.	0.975
H3G8R6_PHYRM	H3G756_PHYRM	H3G8R6	H3G756	Uncharacterized protein.	Uncharacterized protein.	0.905
H3G8R6_PHYRM	H3G9E8_PHYRM	H3G8R6	H3G9E8	Uncharacterized protein.	Uncharacterized protein.	0.758
H3G8R6_PHYRM	H3GAH3_PHYRM	H3G8R6	H3GAH3	Uncharacterized protein.	Uncharacterized protein.	0.993
H3G8R6_PHYRM	H3GAT0_PHYRM	H3G8R6	H3GAT0	Uncharacterized protein.	Uncharacterized protein.	0.898
H3G8R6_PHYRM	H3GB79_PHYRM	H3G8R6	H3GB79	Uncharacterized protein.	Uncharacterized protein.	0.993
H3G8R6_PHYRM	H3GVY9_PHYRM	H3G8R6	H3GVY9	Uncharacterized protein.	Uncharacterized protein.	0.898
H3G8R6_PHYRM	H3GY44_PHYRM	H3G8R6	H3GY44	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 32 family.	0.427
H3G8R6_PHYRM	H3GY45_PHYRM	H3G8R6	H3GY45	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 32 family.	0.427
H3G8R6_PHYRM	H3GY46_PHYRM	H3G8R6	H3GY46	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 32 family.	0.427
H3G8R6_PHYRM	H3GY80_PHYRM	H3G8R6	H3GY80	Uncharacterized protein.	Uncharacterized protein.	0.586

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