(56 nodes) Tyrosine metabolism network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GAB9_PHYRM	Uncharacterized protein; Belongs to the GST superfamily. (225 aa)
	H3H2T1_PHYRM	Uncharacterized protein. (226 aa)
	H3H5S4_PHYRM	Uncharacterized protein. (261 aa)
	H3HAJ1_PHYRM	Uncharacterized protein. (257 aa)
	H3HDV6_PHYRM	Peptidase_S15 domain-containing protein. (477 aa)
	H3HDZ9_PHYRM	AMMECR1 domain-containing protein. (197 aa)
	H3G6I8_PHYRM	Aminotran_1_2 domain-containing protein. (412 aa)
	H3G9S1_PHYRM	Aspartate aminotransferase. (427 aa)
	H3G6U0_PHYRM	PKS_ER domain-containing protein. (352 aa)
	H3G6T9_PHYRM	ADH_N domain-containing protein. (81 aa)
	H3G6L3_PHYRM	4-hydroxyphenylpyruvate dioxygenase. (415 aa)
	H3G6J1_PHYRM	ADH_N domain-containing protein. (165 aa)
	H3GA46_PHYRM	FAA_hydrolase domain-containing protein. (194 aa)
	H3G5B2_PHYRM	Aminotran_1_2 domain-containing protein. (383 aa)
	H3G5E3_PHYRM	Uncharacterized protein. (366 aa)
	H3GFM0_PHYRM	Uncharacterized protein. (228 aa)
	H3GI85_PHYRM	Aminotran_1_2 domain-containing protein. (366 aa)
	H3GI94_PHYRM	Tyrosinase_Cu-bd domain-containing protein. (667 aa)
	H3GJ12_PHYRM	Aminotran_1_2 domain-containing protein. (435 aa)
	H3GL10_PHYRM	Fe-ADH domain-containing protein. (460 aa)
	H3GLS0_PHYRM	Uncharacterized protein. (120 aa)
	H3GN21_PHYRM	Uncharacterized protein. (312 aa)
	H3GNZ6_PHYRM	Uncharacterized protein; Belongs to the GST superfamily. (322 aa)
	H3GPM1_PHYRM	Uncharacterized protein. (670 aa)
	H3GPM2_PHYRM	Uncharacterized protein. (590 aa)
	H3GPM3_PHYRM	Uncharacterized protein. (635 aa)
	H3GPM4_PHYRM	Uncharacterized protein. (592 aa)
	H3GQC4_PHYRM	Uncharacterized protein. (238 aa)
	H3GR62_PHYRM	Uncharacterized protein. (528 aa)
	H3GR99_PHYRM	Uncharacterized protein. (117 aa)
	H3GS32_PHYRM	Uncharacterized protein. (665 aa)
	H3GS37_PHYRM	Uncharacterized protein. (665 aa)
	H3GS41_PHYRM	Uncharacterized protein. (640 aa)
	H3GS42_PHYRM	ACT domain-containing protein. (648 aa)
	H3GSF0_PHYRM	FAA_hydrolase domain-containing protein. (308 aa)
	H3GU97_PHYRM	Uncharacterized protein. (233 aa)
	H3GU99_PHYRM	Uncharacterized protein. (246 aa)
	H3GUH1_PHYRM	Uncharacterized protein. (442 aa)
	H3GUH3_PHYRM	Uncharacterized protein. (167 aa)
	H3GFA7_PHYRM	Uncharacterized protein. (537 aa)
	H3GFA6_PHYRM	Uncharacterized protein. (528 aa)
	H3GUJ5_PHYRM	Uncharacterized protein. (225 aa)
	H3GUJ7_PHYRM	Uncharacterized protein. (225 aa)
	H3GUK1_PHYRM	Uncharacterized protein. (230 aa)
	H3GZ53_PHYRM	SH3 domain-containing protein. (1658 aa)
	H3GZH9_PHYRM	Uncharacterized protein; Belongs to the GST superfamily. (221 aa)
	H3H1D3_PHYRM	Uncharacterized protein. (227 aa)
	H3H1F9_PHYRM	Uncharacterized protein. (518 aa)
	H3H1F8_PHYRM	Uncharacterized protein. (120 aa)
	H3G8D2_PHYRM	Uncharacterized protein. (440 aa)
	H3G8A0_PHYRM	4-hydroxyphenylpyruvate dioxygenase. (415 aa)
	H3GCI8_PHYRM	Uncharacterized protein. (532 aa)
	H3GAU7_PHYRM	Fumarylacetoacetase. (422 aa)
	H3GAL4_PHYRM	PKS_ER domain-containing protein. (401 aa)
	H3GAC1_PHYRM	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (392 aa)
	H3H1V1_PHYRM	PKS_ER domain-containing protein. (412 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5B2_PHYRM	H3G5E3_PHYRM	H3G5B2	H3G5E3	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.539
H3G5B2_PHYRM	H3G6I8_PHYRM	H3G5B2	H3G6I8	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.891
H3G5B2_PHYRM	H3G6L3_PHYRM	H3G5B2	H3G6L3	Aminotran_1_2 domain-containing protein.	4-hydroxyphenylpyruvate dioxygenase.	0.893
H3G5B2_PHYRM	H3G8A0_PHYRM	H3G5B2	H3G8A0	Aminotran_1_2 domain-containing protein.	4-hydroxyphenylpyruvate dioxygenase.	0.893
H3G5B2_PHYRM	H3G9S1_PHYRM	H3G5B2	H3G9S1	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.933
H3G5B2_PHYRM	H3GJ12_PHYRM	H3G5B2	H3GJ12	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.891
H3G5B2_PHYRM	H3GS32_PHYRM	H3G5B2	H3GS32	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.871
H3G5B2_PHYRM	H3GS37_PHYRM	H3G5B2	H3GS37	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.871
H3G5B2_PHYRM	H3GS41_PHYRM	H3G5B2	H3GS41	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.871
H3G5B2_PHYRM	H3GS42_PHYRM	H3G5B2	H3GS42	Aminotran_1_2 domain-containing protein.	ACT domain-containing protein.	0.871
H3G5B2_PHYRM	H3GZ53_PHYRM	H3G5B2	H3GZ53	Aminotran_1_2 domain-containing protein.	SH3 domain-containing protein.	0.539
H3G5B2_PHYRM	H3H5S4_PHYRM	H3G5B2	H3H5S4	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.539
H3G5E3_PHYRM	H3G5B2_PHYRM	H3G5E3	H3G5B2	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.539
H3G5E3_PHYRM	H3G6I8_PHYRM	H3G5E3	H3G6I8	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.537
H3G5E3_PHYRM	H3G9S1_PHYRM	H3G5E3	H3G9S1	Uncharacterized protein.	Aspartate aminotransferase.	0.611
H3G5E3_PHYRM	H3GI85_PHYRM	H3G5E3	H3GI85	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.539
H3G5E3_PHYRM	H3GJ12_PHYRM	H3G5E3	H3GJ12	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.537
H3G5E3_PHYRM	H3GS32_PHYRM	H3G5E3	H3GS32	Uncharacterized protein.	Uncharacterized protein.	0.461
H3G5E3_PHYRM	H3GS37_PHYRM	H3G5E3	H3GS37	Uncharacterized protein.	Uncharacterized protein.	0.461
H3G5E3_PHYRM	H3GS41_PHYRM	H3G5E3	H3GS41	Uncharacterized protein.	Uncharacterized protein.	0.461

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