(50 nodes) Two-component system network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G508_PHYRM	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis. (480 aa)
	H3G4X6_PHYRM	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family. (264 aa)
	H3HE81_PHYRM	FYVE-type domain-containing protein. (514 aa)
	H3HDB7_PHYRM	PDZ domain-containing protein. (525 aa)
	H3HBB2_PHYRM	Amino acid transporter. (548 aa)
	H3H8F6_PHYRM	GAF domain-containing protein. (178 aa)
	H3H4K7_PHYRM	Protein-serine/threonine kinase. (380 aa)
	H3H2A4_PHYRM	FYVE-type domain-containing protein. (698 aa)
	H3GZ75_PHYRM	Uncharacterized protein. (2300 aa)
	H3GYR6_PHYRM	GST C-terminal domain-containing protein. (314 aa)
	H3GYR5_PHYRM	GST C-terminal domain-containing protein. (314 aa)
	H3GYR4_PHYRM	GST C-terminal domain-containing protein. (316 aa)
	H3GYK6_PHYRM	Uncharacterized protein. (2090 aa)
	H3GW92_PHYRM	Uncharacterized protein. (2783 aa)
	H3GW90_PHYRM	Uncharacterized protein. (1922 aa)
	H3GVD9_PHYRM	Amino acid transporter. (617 aa)
	H3GVC5_PHYRM	Uncharacterized protein. (456 aa)
	H3GUV7_PHYRM	FYVE-type domain-containing protein. (1114 aa)
	H3GUV6_PHYRM	Uncharacterized protein. (523 aa)
	H3GUV5_PHYRM	FYVE-type domain-containing protein. (416 aa)
	H3GUT2_PHYRM	Uncharacterized protein. (752 aa)
	H3GUT1_PHYRM	Uncharacterized protein. (1322 aa)
	H3GUS9_PHYRM	Uncharacterized protein. (770 aa)
	H3GUS3_PHYRM	Uncharacterized protein. (673 aa)
	H3GUS2_PHYRM	Uncharacterized protein. (481 aa)
	H3GUB5_PHYRM	Amino acid transporter. (538 aa)
	H3GSU1_PHYRM	Amino acid transporter. (454 aa)
	H3GS72_PHYRM	SPX domain-containing protein. (672 aa)
	H3GNS5_PHYRM	PDZ domain-containing protein. (1549 aa)
	H3GKE4_PHYRM	Uncharacterized protein. (1993 aa)
	H3GKE0_PHYRM	Uncharacterized protein. (2813 aa)
	H3GKD9_PHYRM	Uncharacterized protein. (1297 aa)
	H3GK06_PHYRM	Protein-serine/threonine kinase. (475 aa)
	H3GK05_PHYRM	Protein-serine/threonine kinase. (471 aa)
	H3GHX6_PHYRM	Uncharacterized protein. (1168 aa)
	H3GHW6_PHYRM	Amino acid transporter. (568 aa)
	H3GDG0_PHYRM	Amino acid transporter. (660 aa)
	H3GDD6_PHYRM	Amino acid transporter. (752 aa)
	H3GCM4_PHYRM	Uncharacterized protein. (1535 aa)
	H3GCB1_PHYRM	Amino acid transporter. (553 aa)
	H3GB50_PHYRM	Amino acid transporter. (302 aa)
	H3GAJ8_PHYRM	Amino acid transporter. (302 aa)
	H3GAE3_PHYRM	Threonylcarbamoyl-AMP synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (363 aa)
	H3G9P6_PHYRM	Amino acid transporter. (456 aa)
	H3G9C1_PHYRM	GST C-terminal domain-containing protein. (346 aa)
	H3G892_PHYRM	GST C-terminal domain-containing protein; Belongs to the GST superfamily. (350 aa)
	H3G853_PHYRM	Protein-serine/threonine kinase. (363 aa)
	H3G805_PHYRM	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (461 aa)
	H3G7S7_PHYRM	TrmE_N domain-containing protein. (142 aa)
	H3G747_PHYRM	PDZ_1 domain-containing protein. (908 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G9P6_PHYRM	H3GS72_PHYRM	H3G9P6	H3GS72	Amino acid transporter.	SPX domain-containing protein.	0.535
H3GAJ8_PHYRM	H3GCB1_PHYRM	H3GAJ8	H3GCB1	Amino acid transporter.	Amino acid transporter.	0.531
H3GAJ8_PHYRM	H3GS72_PHYRM	H3GAJ8	H3GS72	Amino acid transporter.	SPX domain-containing protein.	0.535
H3GB50_PHYRM	H3GCB1_PHYRM	H3GB50	H3GCB1	Amino acid transporter.	Amino acid transporter.	0.531
H3GB50_PHYRM	H3GS72_PHYRM	H3GB50	H3GS72	Amino acid transporter.	SPX domain-containing protein.	0.535
H3GCB1_PHYRM	H3GAJ8_PHYRM	H3GCB1	H3GAJ8	Amino acid transporter.	Amino acid transporter.	0.531
H3GCB1_PHYRM	H3GB50_PHYRM	H3GCB1	H3GB50	Amino acid transporter.	Amino acid transporter.	0.531
H3GCB1_PHYRM	H3GS72_PHYRM	H3GCB1	H3GS72	Amino acid transporter.	SPX domain-containing protein.	0.535
H3GDD6_PHYRM	H3GS72_PHYRM	H3GDD6	H3GS72	Amino acid transporter.	SPX domain-containing protein.	0.535
H3GDG0_PHYRM	H3GS72_PHYRM	H3GDG0	H3GS72	Amino acid transporter.	SPX domain-containing protein.	0.535
H3GHW6_PHYRM	H3GS72_PHYRM	H3GHW6	H3GS72	Amino acid transporter.	SPX domain-containing protein.	0.535
H3GHX6_PHYRM	H3GS72_PHYRM	H3GHX6	H3GS72	Uncharacterized protein.	SPX domain-containing protein.	0.535
H3GS72_PHYRM	H3G9P6_PHYRM	H3GS72	H3G9P6	SPX domain-containing protein.	Amino acid transporter.	0.535
H3GS72_PHYRM	H3GAJ8_PHYRM	H3GS72	H3GAJ8	SPX domain-containing protein.	Amino acid transporter.	0.535
H3GS72_PHYRM	H3GB50_PHYRM	H3GS72	H3GB50	SPX domain-containing protein.	Amino acid transporter.	0.535
H3GS72_PHYRM	H3GCB1_PHYRM	H3GS72	H3GCB1	SPX domain-containing protein.	Amino acid transporter.	0.535
H3GS72_PHYRM	H3GDD6_PHYRM	H3GS72	H3GDD6	SPX domain-containing protein.	Amino acid transporter.	0.535
H3GS72_PHYRM	H3GDG0_PHYRM	H3GS72	H3GDG0	SPX domain-containing protein.	Amino acid transporter.	0.535
H3GS72_PHYRM	H3GHW6_PHYRM	H3GS72	H3GHW6	SPX domain-containing protein.	Amino acid transporter.	0.535
H3GS72_PHYRM	H3GHX6_PHYRM	H3GS72	H3GHX6	SPX domain-containing protein.	Uncharacterized protein.	0.535

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