(101 nodes) mRNA surveillance pathway network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GMP6_PHYRM	Uncharacterized protein. (898 aa)
	H3GMJ5_PHYRM	Uncharacterized protein. (968 aa)
	H3GM72_PHYRM	Beta-Casp domain-containing protein. (725 aa)
	H3GM16_PHYRM	Uncharacterized protein. (473 aa)
	H3GM00_PHYRM	RRM domain-containing protein. (343 aa)
	H3GLR2_PHYRM	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (620 aa)
	H3GK51_PHYRM	Uncharacterized protein. (262 aa)
	H3GK50_PHYRM	FATC domain-containing protein. (131 aa)
	H3G6Z0_PHYRM	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (407 aa)
	H3GMV8_PHYRM	Uncharacterized protein. (586 aa)
	H3GML8_PHYRM	Fip1 domain-containing protein. (550 aa)
	H3G570_PHYRM	Tr-type G domain-containing protein. (433 aa)
	H3G5C7_PHYRM	Tr-type G domain-containing protein. (435 aa)
	H3G5R3_PHYRM	Uncharacterized protein. (830 aa)
	H3G6M7_PHYRM	Nuclear cap-binding protein subunit 2. (121 aa)
	H3G6T6_PHYRM	FAD_binding_2 domain-containing protein. (450 aa)
	H3G6Y3_PHYRM	RRM domain-containing protein. (144 aa)
	H3G791_PHYRM	Uncharacterized protein. (436 aa)
	H3G7G6_PHYRM	PWI domain-containing protein. (107 aa)
	H3G7L0_PHYRM	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (441 aa)
	H3G7Q1_PHYRM	Uncharacterized protein. (144 aa)
	H3G835_PHYRM	Uncharacterized protein. (673 aa)
	H3G8L9_PHYRM	Serine/threonine-protein phosphatase. (312 aa)
	H3G8R9_PHYRM	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (406 aa)
	H3G8U4_PHYRM	DUF667 domain-containing protein. (205 aa)
	H3G904_PHYRM	Serine/threonine-protein phosphatase. (319 aa)
	H3G9F4_PHYRM	eRF1_1 domain-containing protein. (439 aa)
	H3G9K6_PHYRM	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (444 aa)
	H3G9L3_PHYRM	RRM domain-containing protein. (159 aa)
	H3G9Z6_PHYRM	Uncharacterized protein. (428 aa)
	H3GA17_PHYRM	Uncharacterized protein; Belongs to the DEAD box helicase family. (406 aa)
	H3GA30_PHYRM	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (309 aa)
	H3GAR9_PHYRM	Uncharacterized protein. (581 aa)
	H3GAS5_PHYRM	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)
	H3GAU6_PHYRM	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (613 aa)
	H3GBH3_PHYRM	mRNA_cap_enzyme domain-containing protein. (592 aa)
	H3GC55_PHYRM	Uncharacterized protein. (627 aa)
	H3GCR4_PHYRM	PH domain-containing protein. (740 aa)
	H3GD06_PHYRM	Uncharacterized protein. (577 aa)
	H3GDF7_PHYRM	Uncharacterized protein. (174 aa)
	H3GE37_PHYRM	Uncharacterized protein. (626 aa)
	H3GED7_PHYRM	Uncharacterized protein. (1249 aa)
	H3GEI2_PHYRM	TYR_PHOSPHATASE_2 domain-containing protein. (234 aa)
	H3GFY5_PHYRM	TPR_REGION domain-containing protein. (736 aa)
	H3GG35_PHYRM	Uncharacterized protein. (377 aa)
	H3GGB4_PHYRM	Uncharacterized protein. (402 aa)
	H3GGK4_PHYRM	Uncharacterized protein. (1120 aa)
	H3GGT5_PHYRM	WD_REPEATS_REGION domain-containing protein. (392 aa)
	H3GGU3_PHYRM	Uncharacterized protein. (556 aa)
	H3GH17_PHYRM	Uncharacterized protein. (224 aa)
	H3GHC6_PHYRM	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (695 aa)
	H3GIT2_PHYRM	RING-type domain-containing protein. (158 aa)
	H3GJ54_PHYRM	Uncharacterized protein. (318 aa)
	H3GJ78_PHYRM	Beta-Casp domain-containing protein. (585 aa)
	H3GJA4_PHYRM	DUF667 domain-containing protein. (783 aa)
	H3GJT1_PHYRM	Metallophos domain-containing protein. (261 aa)
	H3GJW5_PHYRM	Uncharacterized protein. (597 aa)
	H3HEG7_PHYRM	RRM domain-containing protein. (285 aa)
	H3HDW0_PHYRM	Uncharacterized protein. (406 aa)
	H3HDB3_PHYRM	MPN domain-containing protein. (365 aa)
	H3HD88_PHYRM	RING-type domain-containing protein. (344 aa)
	H3HD70_PHYRM	Lactamase_B domain-containing protein. (854 aa)
	H3HCT8_PHYRM	Uncharacterized protein. (149 aa)
	H3HCT1_PHYRM	DUF667 domain-containing protein. (492 aa)
	H3HCC9_PHYRM	Uncharacterized protein. (161 aa)
	H3HBJ4_PHYRM	Uncharacterized protein. (696 aa)
	H3HAY8_PHYRM	PDZ domain-containing protein. (1112 aa)
	H3H725_PHYRM	Uncharacterized protein. (169 aa)
	H3H576_PHYRM	Uncharacterized protein. (943 aa)
	H3H3Q9_PHYRM	Uncharacterized protein. (375 aa)
	H3H388_PHYRM	Uncharacterized protein. (400 aa)
	H3H336_PHYRM	Uncharacterized protein. (552 aa)
	H3H2I9_PHYRM	Smg4_UPF3 domain-containing protein. (432 aa)
	H3H2D0_PHYRM	Uncharacterized protein. (531 aa)
	H3H253_PHYRM	Uncharacterized protein. (524 aa)
	H3GZX6_PHYRM	Cleavage and polyadenylation specificity factor subunit 2. (731 aa)
	H3GZW6_PHYRM	Uncharacterized protein. (228 aa)
	H3GZB1_PHYRM	Uncharacterized protein. (942 aa)
	H3GYH9_PHYRM	Uncharacterized protein. (604 aa)
	H3GYE2_PHYRM	Uncharacterized protein. (737 aa)
	H3GY55_PHYRM	RRM domain-containing protein. (406 aa)
	H3GY47_PHYRM	Uncharacterized protein. (934 aa)
	H3GWX4_PHYRM	Uncharacterized protein. (747 aa)
	H3GWN9_PHYRM	Uncharacterized protein. (427 aa)
	H3GWB8_PHYRM	Uncharacterized protein. (675 aa)
	H3GVV7_PHYRM	Uncharacterized protein. (5053 aa)
	H3GV12_PHYRM	DUF667 domain-containing protein. (199 aa)
	H3GV11_PHYRM	Uncharacterized protein. (676 aa)
	H3GV05_PHYRM	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (438 aa)
	H3GUH2_PHYRM	CPSF_A domain-containing protein. (1775 aa)
	H3GUF3_PHYRM	RRM domain-containing protein. (266 aa)
	H3GUC2_PHYRM	CID domain-containing protein. (593 aa)
	H3GU25_PHYRM	Uncharacterized protein. (676 aa)
	H3GTS5_PHYRM	Uncharacterized protein. (363 aa)
	H3GSZ8_PHYRM	Uncharacterized protein. (1648 aa)
	H3GS93_PHYRM	mRNA_cap_enzyme domain-containing protein. (453 aa)
	H3GRP2_PHYRM	Uncharacterized protein. (1193 aa)
	H3GQ84_PHYRM	Uncharacterized protein. (429 aa)
	H3GQ66_PHYRM	Uncharacterized protein. (333 aa)
	H3GP36_PHYRM	RRM domain-containing protein. (500 aa)
	H3GNQ4_PHYRM	Uncharacterized protein; Belongs to the DEAD box helicase family. (564 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G570_PHYRM	H3G5R3_PHYRM	H3G570	H3G5R3	Tr-type G domain-containing protein.	Uncharacterized protein.	0.453
H3G570_PHYRM	H3G8R9_PHYRM	H3G570	H3G8R9	Tr-type G domain-containing protein.	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	0.983
H3G5C7_PHYRM	H3G5R3_PHYRM	H3G5C7	H3G5R3	Tr-type G domain-containing protein.	Uncharacterized protein.	0.944
H3G5C7_PHYRM	H3G791_PHYRM	H3G5C7	H3G791	Tr-type G domain-containing protein.	Uncharacterized protein.	0.419
H3G5C7_PHYRM	H3G8R9_PHYRM	H3G5C7	H3G8R9	Tr-type G domain-containing protein.	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	0.630
H3G5C7_PHYRM	H3G9F4_PHYRM	H3G5C7	H3G9F4	Tr-type G domain-containing protein.	eRF1_1 domain-containing protein.	0.999
H3G5C7_PHYRM	H3GA17_PHYRM	H3G5C7	H3GA17	Tr-type G domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.419
H3G5C7_PHYRM	H3GAU6_PHYRM	H3G5C7	H3GAU6	Tr-type G domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.943
H3G5C7_PHYRM	H3GK50_PHYRM	H3G5C7	H3GK50	Tr-type G domain-containing protein.	FATC domain-containing protein.	0.611
H3G5C7_PHYRM	H3GK51_PHYRM	H3G5C7	H3GK51	Tr-type G domain-containing protein.	Uncharacterized protein.	0.611
H3G5C7_PHYRM	H3GMP6_PHYRM	H3G5C7	H3GMP6	Tr-type G domain-containing protein.	Uncharacterized protein.	0.423
H3G5C7_PHYRM	H3H2I9_PHYRM	H3G5C7	H3H2I9	Tr-type G domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.577
H3G5R3_PHYRM	H3G570_PHYRM	H3G5R3	H3G570	Uncharacterized protein.	Tr-type G domain-containing protein.	0.453
H3G5R3_PHYRM	H3G5C7_PHYRM	H3G5R3	H3G5C7	Uncharacterized protein.	Tr-type G domain-containing protein.	0.944
H3G5R3_PHYRM	H3G6M7_PHYRM	H3G5R3	H3G6M7	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.897
H3G5R3_PHYRM	H3G6Y3_PHYRM	H3G5R3	H3G6Y3	Uncharacterized protein.	RRM domain-containing protein.	0.893
H3G5R3_PHYRM	H3G7G6_PHYRM	H3G5R3	H3G7G6	Uncharacterized protein.	PWI domain-containing protein.	0.925
H3G5R3_PHYRM	H3G8L9_PHYRM	H3G5R3	H3G8L9	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.657
H3G5R3_PHYRM	H3G904_PHYRM	H3G5R3	H3G904	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.657
H3G5R3_PHYRM	H3G9F4_PHYRM	H3G5R3	H3G9F4	Uncharacterized protein.	eRF1_1 domain-containing protein.	0.863

page 1 of 98

Server load: low (22%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2025

Credits

Access

Info

About