(43 nodes) RNA polymerase network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G821_PHYRM	RNA_pol_L_2 domain-containing protein. (51 aa)
	H3GH35_PHYRM	Uncharacterized protein. (404 aa)
	H3GGU6_PHYRM	Uncharacterized protein. (217 aa)
	H3GGU1_PHYRM	SHS2_Rpb7-N domain-containing protein. (297 aa)
	H3GG85_PHYRM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
	H3GD40_PHYRM	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (607 aa)
	H3GCA7_PHYRM	Uncharacterized protein. (346 aa)
	H3GA78_PHYRM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1824 aa)
	H3GA26_PHYRM	RNA_pol_L_2 domain-containing protein. (119 aa)
	H3GA07_PHYRM	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1298 aa)
	H3G9I1_PHYRM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (105 aa)
	H3G9F7_PHYRM	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1158 aa)
	H3G8F7_PHYRM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1453 aa)
	H3G846_PHYRM	TFIIS-type domain-containing protein. (40 aa)
	H3GH54_PHYRM	Nitroreductase domain-containing protein. (223 aa)
	H3G809_PHYRM	Uncharacterized protein. (64 aa)
	H3G7Y0_PHYRM	DPH-type MB domain-containing protein. (68 aa)
	H3G7W8_PHYRM	LSM14 domain-containing protein. (83 aa)
	H3G5Y4_PHYRM	Peptidase_M14 domain-containing protein. (155 aa)
	H3GP02_PHYRM	Uncharacterized protein. (429 aa)
	H3GR00_PHYRM	Uncharacterized protein. (311 aa)
	H3GUB3_PHYRM	Transcriptional adapter. (579 aa)
	H3GV90_PHYRM	RPOLD domain-containing protein. (376 aa)
	H3GW95_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (199 aa)
	H3GWJ9_PHYRM	RNA_pol_L_2 domain-containing protein. (109 aa)
	H3GYW5_PHYRM	Uncharacterized protein. (306 aa)
	H3H1S7_PHYRM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1800 aa)
	H3H2T6_PHYRM	Uncharacterized protein. (1943 aa)
	H3H373_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (364 aa)
	H3H5H0_PHYRM	Uncharacterized protein. (378 aa)
	H3H702_PHYRM	TFIIS central domain-containing protein. (311 aa)
	H3HB20_PHYRM	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (286 aa)
	H3HBL2_PHYRM	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (142 aa)
	H3HCE7_PHYRM	Uncharacterized protein. (589 aa)
	H3HDK0_PHYRM	Uncharacterized protein. (206 aa)
	H3G5P5_PHYRM	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1145 aa)
	H3G5L6_PHYRM	Uncharacterized protein. (44 aa)
	H3G548_PHYRM	Uncharacterized protein. (114 aa)
	H3GH55_PHYRM	Nitroreductase domain-containing protein. (281 aa)
	H3GHD4_PHYRM	RPOL4c domain-containing protein. (155 aa)
	H3GI13_PHYRM	Uncharacterized protein. (177 aa)
	H3GK19_PHYRM	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (667 aa)
	H3GMV0_PHYRM	RPOLD domain-containing protein. (327 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G548_PHYRM	H3G5L6_PHYRM	H3G548	H3G5L6	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3G5P5_PHYRM	H3G548	H3G5P5	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H3G548_PHYRM	H3G809_PHYRM	H3G548	H3G809	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3G821_PHYRM	H3G548	H3G821	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.989
H3G548_PHYRM	H3G846_PHYRM	H3G548	H3G846	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.954
H3G548_PHYRM	H3G8F7_PHYRM	H3G548	H3G8F7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H3G548_PHYRM	H3G9F7_PHYRM	H3G548	H3G9F7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H3G548_PHYRM	H3G9I1_PHYRM	H3G548	H3G9I1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
H3G548_PHYRM	H3GA07_PHYRM	H3G548	H3GA07	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
H3G548_PHYRM	H3GA26_PHYRM	H3G548	H3GA26	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
H3G548_PHYRM	H3GA78_PHYRM	H3G548	H3GA78	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.900
H3G548_PHYRM	H3GCA7_PHYRM	H3G548	H3GCA7	Uncharacterized protein.	Uncharacterized protein.	0.992
H3G548_PHYRM	H3GD40_PHYRM	H3G548	H3GD40	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.983
H3G548_PHYRM	H3GG85_PHYRM	H3G548	H3GG85	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
H3G548_PHYRM	H3GGU1_PHYRM	H3G548	H3GGU1	Uncharacterized protein.	SHS2_Rpb7-N domain-containing protein.	0.967
H3G548_PHYRM	H3GH35_PHYRM	H3G548	H3GH35	Uncharacterized protein.	Uncharacterized protein.	0.976
H3G548_PHYRM	H3GH54_PHYRM	H3G548	H3GH54	Uncharacterized protein.	Nitroreductase domain-containing protein.	0.967
H3G548_PHYRM	H3GH55_PHYRM	H3G548	H3GH55	Uncharacterized protein.	Nitroreductase domain-containing protein.	0.967
H3G548_PHYRM	H3GHD4_PHYRM	H3G548	H3GHD4	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
H3G548_PHYRM	H3GI13_PHYRM	H3G548	H3GI13	Uncharacterized protein.	Uncharacterized protein.	0.999

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