(37 nodes) Mismatch repair network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G7I0_PHYRM	Uncharacterized protein. (746 aa)
	H3G5C8_PHYRM	DNA ligase. (627 aa)
	H3G5K1_PHYRM	Uncharacterized protein. (209 aa)
	H3G5M2_PHYRM	AAA domain-containing protein. (332 aa)
	H3G5M3_PHYRM	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1090 aa)
	H3G7R5_PHYRM	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (163 aa)
	H3G7Z7_PHYRM	DNA_MISMATCH_REPAIR_2 domain-containing protein. (303 aa)
	H3G8B8_PHYRM	AAA domain-containing protein. (327 aa)
	H3G8T3_PHYRM	AAA domain-containing protein. (353 aa)
	H3G9L8_PHYRM	Uncharacterized protein. (163 aa)
	H3G9U4_PHYRM	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
	H3GAJ2_PHYRM	Uncharacterized protein. (352 aa)
	H3GAM4_PHYRM	DNA polymerase. (1157 aa)
	H3GBS4_PHYRM	TUDOR_5 domain-containing protein. (122 aa)
	H3GCB9_PHYRM	Replication protein A subunit. (622 aa)
	H3GFQ9_PHYRM	Tudor domain-containing protein. (671 aa)
	H3GFU0_PHYRM	Uncharacterized protein. (425 aa)
	H3GG27_PHYRM	Uncharacterized protein. (262 aa)
	H3GGD4_PHYRM	Uncharacterized protein. (1368 aa)
	H3GH16_PHYRM	Uncharacterized protein. (658 aa)
	H3GLH7_PHYRM	Uncharacterized protein. (408 aa)
	H3GQ03_PHYRM	Uncharacterized protein. (694 aa)
	H3GRD9_PHYRM	Uncharacterized protein. (290 aa)
	H3GRJ3_PHYRM	Uncharacterized protein. (654 aa)
	H3GTV2_PHYRM	DNA_MISMATCH_REPAIR_2 domain-containing protein. (811 aa)
	H3GV69_PHYRM	Uncharacterized protein. (439 aa)
	H3GWA8_PHYRM	Replication factor C subunit 1. (850 aa)
	H3GWG2_PHYRM	SAS-6_N domain-containing protein. (545 aa)
	H3GYV4_PHYRM	Uncharacterized protein. (578 aa)
	H3H7F2_PHYRM	Exonuclease domain-containing protein. (355 aa)
	H3HBP6_PHYRM	Uncharacterized protein. (171 aa)
	H3HC10_PHYRM	MutL_C domain-containing protein. (229 aa)
	H3HCJ7_PHYRM	Uncharacterized protein. (450 aa)
	H3HCP8_PHYRM	Uncharacterized protein. (300 aa)
	H3HD43_PHYRM	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (912 aa)
	H3HE25_PHYRM	DNA_ligase_OB_2 domain-containing protein. (630 aa)
	H3HE99_PHYRM	Uncharacterized protein. (407 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5C8_PHYRM	H3G5M2_PHYRM	H3G5C8	H3G5M2	DNA ligase.	AAA domain-containing protein.	0.922
H3G5C8_PHYRM	H3G5M3_PHYRM	H3G5C8	H3G5M3	DNA ligase.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.522
H3G5C8_PHYRM	H3G8B8_PHYRM	H3G5C8	H3G8B8	DNA ligase.	AAA domain-containing protein.	0.793
H3G5C8_PHYRM	H3G8T3_PHYRM	H3G5C8	H3G8T3	DNA ligase.	AAA domain-containing protein.	0.823
H3G5C8_PHYRM	H3G9U4_PHYRM	H3G5C8	H3G9U4	DNA ligase.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.987
H3G5C8_PHYRM	H3GAJ2_PHYRM	H3G5C8	H3GAJ2	DNA ligase.	Uncharacterized protein.	0.840
H3G5C8_PHYRM	H3GAM4_PHYRM	H3G5C8	H3GAM4	DNA ligase.	DNA polymerase.	0.923
H3G5C8_PHYRM	H3GBS4_PHYRM	H3G5C8	H3GBS4	DNA ligase.	TUDOR_5 domain-containing protein.	0.522
H3G5C8_PHYRM	H3GCB9_PHYRM	H3G5C8	H3GCB9	DNA ligase.	Replication protein A subunit.	0.752
H3G5C8_PHYRM	H3GFQ9_PHYRM	H3G5C8	H3GFQ9	DNA ligase.	Tudor domain-containing protein.	0.522
H3G5C8_PHYRM	H3GG27_PHYRM	H3G5C8	H3GG27	DNA ligase.	Uncharacterized protein.	0.792
H3G5C8_PHYRM	H3GGD4_PHYRM	H3G5C8	H3GGD4	DNA ligase.	Uncharacterized protein.	0.910
H3G5C8_PHYRM	H3GH16_PHYRM	H3G5C8	H3GH16	DNA ligase.	Uncharacterized protein.	0.787
H3G5C8_PHYRM	H3GRD9_PHYRM	H3G5C8	H3GRD9	DNA ligase.	Uncharacterized protein.	0.695
H3G5C8_PHYRM	H3GRJ3_PHYRM	H3G5C8	H3GRJ3	DNA ligase.	Uncharacterized protein.	0.792
H3G5C8_PHYRM	H3GV69_PHYRM	H3G5C8	H3GV69	DNA ligase.	Uncharacterized protein.	0.763
H3G5C8_PHYRM	H3GWA8_PHYRM	H3G5C8	H3GWA8	DNA ligase.	Replication factor C subunit 1.	0.787
H3G5C8_PHYRM	H3GWG2_PHYRM	H3G5C8	H3GWG2	DNA ligase.	SAS-6_N domain-containing protein.	0.695
H3G5C8_PHYRM	H3HCP8_PHYRM	H3G5C8	H3HCP8	DNA ligase.	Uncharacterized protein.	0.792
H3G5C8_PHYRM	H3HE25_PHYRM	H3G5C8	H3HE25	DNA ligase.	DNA_ligase_OB_2 domain-containing protein.	0.918

page 1 of 37

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About