STRINGSTRING
rplA rplA rplK rplK rpsP rpsP frr frr rpsT rpsT AKH32699.1 AKH32699.1 AKH32700.1 AKH32700.1 rpsF rpsF rpsB rpsB rplL rplL rpmB rpmB rplY rplY rplS rplS rpmA rpmA rpmF rpmF rpmI rpmI rplT rplT rplU rplU AKH32781.1 AKH32781.1 rpsD rpsD AKH32786.1 AKH32786.1 rplM rplM rpsI rpsI tuf tuf rplC rplC rplD rplD rplW rplW rpsS rpsS rplV rplV rplN rplN rpsH rpsH rpsE rpsE rplI rplI AKH32971.1 AKH32971.1 fusA fusA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rplA50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (226 aa)
rplK50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (146 aa)
rpsP30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (100 aa)
frrRibosome-recycling factor. (179 aa)
rpsT30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa)
AKH32699.150S ribosomal protein L34. (60 aa)
AKH32700.130S ribosomal protein S18. (69 aa)
rpsF30S ribosomal protein S6. (125 aa)
rpsB30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (219 aa)
rplL50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (127 aa)
rpmB50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (63 aa)
rplY50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (197 aa)
rplS50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (163 aa)
rpmA50S ribosomal protein L27. (93 aa)
rpmF50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (76 aa)
rpmI50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (64 aa)
rplT50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (115 aa)
rplU50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (105 aa)
AKH32781.150S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (43 aa)
rpsD30S ribosomal protein S4. (206 aa)
AKH32786.150S ribosomal protein L17. (129 aa)
rplM50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (158 aa)
rpsI30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (137 aa)
tufElongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (390 aa)
rplC50S ribosomal protein L3. (192 aa)
rplD50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. (212 aa)
rplW50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (113 aa)
rpsS30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (85 aa)
rplV50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (110 aa)
rplN50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (124 aa)
rpsH30S ribosomal protein S8; Belongs to the universal ribosomal protein uS8 family. (133 aa)
rpsE30S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (203 aa)
rplI50S ribosomal protein L9. (181 aa)
AKH32971.150S ribosomal protein L31. (77 aa)
fusAElongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. (705 aa)
Your Current Organism:
candidate division SR1 bacterium AalborgAAW1
NCBI taxonomy Id: 1643353
Other names: c. division SR1 bacterium Aalborg_AAW-1, candidate division SR1 bacterium Aalborg_AAW-1
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