(5 nodes) RNA polymerase, and Transcription antitermination network (candidate division SR1 bacterium AalborgAAW1)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nusG	Hypothetical protein; Participates in transcription elongation, termination and antitermination. (192 aa)
	rpoC	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1284 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1200 aa)
	rpoA	DNA-directed RNA polymerase subunit alpha. (334 aa)
	AKH33008.1	Hypothetical protein; Transcription termination/antitermination protein NusA. (342 aa)

Your Current Organism:

candidate division SR1 bacterium AalborgAAW1

NCBI taxonomy Id: 1643353
Other names: c. division SR1 bacterium Aalborg_AAW-1, candidate division SR1 bacterium Aalborg_AAW-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKH33008.1	nusG	XF24_00682	XF24_00101	Hypothetical protein; Transcription termination/antitermination protein NusA.	Hypothetical protein; Participates in transcription elongation, termination and antitermination.	0.933
AKH33008.1	rpoA	XF24_00682	XF24_00452	Hypothetical protein; Transcription termination/antitermination protein NusA.	DNA-directed RNA polymerase subunit alpha.	0.999
AKH33008.1	rpoB	XF24_00682	XF24_00357	Hypothetical protein; Transcription termination/antitermination protein NusA.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
AKH33008.1	rpoC	XF24_00682	XF24_00356	Hypothetical protein; Transcription termination/antitermination protein NusA.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
nusG	AKH33008.1	XF24_00101	XF24_00682	Hypothetical protein; Participates in transcription elongation, termination and antitermination.	Hypothetical protein; Transcription termination/antitermination protein NusA.	0.933
nusG	rpoA	XF24_00101	XF24_00452	Hypothetical protein; Participates in transcription elongation, termination and antitermination.	DNA-directed RNA polymerase subunit alpha.	0.894
nusG	rpoB	XF24_00101	XF24_00357	Hypothetical protein; Participates in transcription elongation, termination and antitermination.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
nusG	rpoC	XF24_00101	XF24_00356	Hypothetical protein; Participates in transcription elongation, termination and antitermination.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.987
rpoA	AKH33008.1	XF24_00452	XF24_00682	DNA-directed RNA polymerase subunit alpha.	Hypothetical protein; Transcription termination/antitermination protein NusA.	0.999
rpoA	nusG	XF24_00452	XF24_00101	DNA-directed RNA polymerase subunit alpha.	Hypothetical protein; Participates in transcription elongation, termination and antitermination.	0.894
rpoA	rpoB	XF24_00452	XF24_00357	DNA-directed RNA polymerase subunit alpha.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	XF24_00452	XF24_00356	DNA-directed RNA polymerase subunit alpha.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	AKH33008.1	XF24_00357	XF24_00682	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein; Transcription termination/antitermination protein NusA.	0.999
rpoB	nusG	XF24_00357	XF24_00101	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein; Participates in transcription elongation, termination and antitermination.	0.965
rpoB	rpoA	XF24_00357	XF24_00452	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha.	0.999
rpoB	rpoC	XF24_00357	XF24_00356	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoC	AKH33008.1	XF24_00356	XF24_00682	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein; Transcription termination/antitermination protein NusA.	0.997
rpoC	nusG	XF24_00356	XF24_00101	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein; Participates in transcription elongation, termination and antitermination.	0.987
rpoC	rpoA	XF24_00356	XF24_00452	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha.	0.999
rpoC	rpoB	XF24_00356	XF24_00357	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999