(8 nodes) Mixed, incl. Nitrate/nitrite sensing protein, bacterial, and Peptidase regulator activity network (Streptomyces puniciscabiei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOR37052.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1178 aa)
	AOR31905.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	AOR31906.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	AOR31907.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	AOR37054.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1022 aa)
	AOR37053.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	AOR37055.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	AOR31908.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)

Your Current Organism:

Streptomyces puniciscabiei

NCBI taxonomy Id: 164348
Other names: KACC 20253, LMG 21391, LMG:21391, S. puniciscabiei, Streptomyces puniciscabiei Park et al. 2003, Streptomyces sp. S77, strain S77

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOR31905.1	AOR31906.1	BFF78_13350	BFF78_13355	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AOR31905.1	AOR31907.1	BFF78_13350	BFF78_13360	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AOR31905.1	AOR31908.1	BFF78_13350	BFF78_13380	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AOR31905.1	AOR37052.1	BFF78_13350	BFF78_13345	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AOR31905.1	AOR37054.1	BFF78_13350	BFF78_13365	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
AOR31905.1	AOR37055.1	BFF78_13350	BFF78_13375	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
AOR31906.1	AOR31905.1	BFF78_13355	BFF78_13350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AOR31906.1	AOR31907.1	BFF78_13355	BFF78_13360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AOR31906.1	AOR31908.1	BFF78_13355	BFF78_13380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
AOR31906.1	AOR37052.1	BFF78_13355	BFF78_13345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AOR31906.1	AOR37053.1	BFF78_13355	BFF78_13370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
AOR31906.1	AOR37054.1	BFF78_13355	BFF78_13365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AOR31907.1	AOR31905.1	BFF78_13360	BFF78_13350	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AOR31907.1	AOR31906.1	BFF78_13360	BFF78_13355	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AOR31907.1	AOR37052.1	BFF78_13360	BFF78_13345	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
AOR31907.1	AOR37053.1	BFF78_13360	BFF78_13370	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AOR31907.1	AOR37054.1	BFF78_13360	BFF78_13365	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
AOR31907.1	AOR37055.1	BFF78_13360	BFF78_13375	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
AOR31908.1	AOR31905.1	BFF78_13380	BFF78_13350	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AOR31908.1	AOR31906.1	BFF78_13380	BFF78_13355	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893

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