(4 nodes) Glutamine synthetase/guanido kinase, catalytic domain network (Actinobacteria bacterium IMCC26256)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKL72505.1	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I. (441 aa)
	AKL73609.1	PFAM: Glutamine synthetase, catalytic domain. (457 aa)
	gatB	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (492 aa)
	AKL72653.1	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain. (357 aa)

Your Current Organism:

Actinobacteria bacterium IMCC26256

NCBI taxonomy Id: 1650658
Other names: A. bacterium IMCC26256

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKL72505.1	AKL72653.1	IMCC26256_11202	IMCC26256_11354	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain.	0.905
AKL72505.1	AKL73609.1	IMCC26256_11202	IMCC26256_111328	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.	PFAM: Glutamine synthetase, catalytic domain.	0.923
AKL72653.1	AKL72505.1	IMCC26256_11354	IMCC26256_11202	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain.	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.	0.905
AKL72653.1	AKL73609.1	IMCC26256_11354	IMCC26256_111328	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain.	PFAM: Glutamine synthetase, catalytic domain.	0.900
AKL73609.1	AKL72505.1	IMCC26256_111328	IMCC26256_11202	PFAM: Glutamine synthetase, catalytic domain.	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.	0.923
AKL73609.1	AKL72653.1	IMCC26256_111328	IMCC26256_11354	PFAM: Glutamine synthetase, catalytic domain.	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain.	0.900