(20 nodes) Mixed, incl. ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing, and ABC-type maltose transporter activity network (Rhodococcus sp. PBTS1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sugC_1	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily. (370 aa)
	ycjP_1	Inner membrane ABC transporter permease protein YcjP. (214 aa)
	ycjP_2	Inner membrane ABC transporter permease protein YcjP. (197 aa)
	sugC_2	Trehalose import ATP-binding protein SugC. (370 aa)
	sugC_3	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily. (387 aa)
	sugB_1	Trehalose transport system permease protein SugB. (276 aa)
	sugA	Trehalose transport system permease protein SugA. (313 aa)
	lpqY	Trehalose-binding lipoprotein LpqY. (457 aa)
	kdgK_2	2-dehydro-3-deoxygluconokinase. (306 aa)
	lacF	Lactose transport system permease protein LacF. (308 aa)
	araQ	L-arabinose transport system permease protein AraQ. (288 aa)
	ugpB	Sn-glycerol-3-phosphate-binding periplasmic protein UgpB. (442 aa)
	AMY21294.1	Hypothetical protein. (90 aa)
	por	Polyol:NADP oxidoreductase. (496 aa)
	gutB_2	Sorbitol dehydrogenase. (340 aa)
	deoR_2	Deoxyribonucleoside regulator. (330 aa)
	AMY21320.1	Putative ABC transporter-binding protein. (449 aa)
	ugpA	Sn-glycerol-3-phosphate transport system permease protein UgpA. (315 aa)
	sugB_2	Trehalose transport system permease protein SugB. (293 aa)
	sugC_4	Trehalose import ATP-binding protein SugC. (370 aa)

Your Current Organism:

Rhodococcus sp. PBTS1

NCBI taxonomy Id: 1653478
Other names: R. sp. PBTS 1, Rhodococcus sp. PBTS 1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY21294.1	AMY21320.1	A3Q40_03946	A3Q40_03972	Hypothetical protein.	Putative ABC transporter-binding protein.	0.635
AMY21294.1	araQ	A3Q40_03946	A3Q40_03943	Hypothetical protein.	L-arabinose transport system permease protein AraQ.	0.814
AMY21294.1	lacF	A3Q40_03946	A3Q40_03942	Hypothetical protein.	Lactose transport system permease protein LacF.	0.840
AMY21294.1	lpqY	A3Q40_03946	A3Q40_02291	Hypothetical protein.	Trehalose-binding lipoprotein LpqY.	0.658
AMY21294.1	sugA	A3Q40_03946	A3Q40_02290	Hypothetical protein.	Trehalose transport system permease protein SugA.	0.749
AMY21294.1	sugB_1	A3Q40_03946	A3Q40_02289	Hypothetical protein.	Trehalose transport system permease protein SugB.	0.911
AMY21294.1	sugB_2	A3Q40_03946	A3Q40_03974	Hypothetical protein.	Trehalose transport system permease protein SugB.	0.602
AMY21294.1	ugpA	A3Q40_03946	A3Q40_03973	Hypothetical protein.	Sn-glycerol-3-phosphate transport system permease protein UgpA.	0.625
AMY21294.1	ugpB	A3Q40_03946	A3Q40_03944	Hypothetical protein.	Sn-glycerol-3-phosphate-binding periplasmic protein UgpB.	0.952
AMY21294.1	ycjP_1	A3Q40_03946	A3Q40_00005	Hypothetical protein.	Inner membrane ABC transporter permease protein YcjP.	0.602
AMY21294.1	ycjP_2	A3Q40_03946	A3Q40_00008	Hypothetical protein.	Inner membrane ABC transporter permease protein YcjP.	0.602
AMY21320.1	AMY21294.1	A3Q40_03972	A3Q40_03946	Putative ABC transporter-binding protein.	Hypothetical protein.	0.635
AMY21320.1	araQ	A3Q40_03972	A3Q40_03943	Putative ABC transporter-binding protein.	L-arabinose transport system permease protein AraQ.	0.705
AMY21320.1	deoR_2	A3Q40_03972	A3Q40_03971	Putative ABC transporter-binding protein.	Deoxyribonucleoside regulator.	0.946
AMY21320.1	gutB_2	A3Q40_03972	A3Q40_03970	Putative ABC transporter-binding protein.	Sorbitol dehydrogenase.	0.712
AMY21320.1	kdgK_2	A3Q40_03972	A3Q40_02725	Putative ABC transporter-binding protein.	2-dehydro-3-deoxygluconokinase.	0.420
AMY21320.1	lacF	A3Q40_03972	A3Q40_03942	Putative ABC transporter-binding protein.	Lactose transport system permease protein LacF.	0.712
AMY21320.1	por	A3Q40_03972	A3Q40_03969	Putative ABC transporter-binding protein.	Polyol:NADP oxidoreductase.	0.899
AMY21320.1	sugA	A3Q40_03972	A3Q40_02290	Putative ABC transporter-binding protein.	Trehalose transport system permease protein SugA.	0.894
AMY21320.1	sugB_1	A3Q40_03972	A3Q40_02289	Putative ABC transporter-binding protein.	Trehalose transport system permease protein SugB.	0.651