(11 nodes) Mixed, incl. ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing, and ABC-type maltose transporter activity network (Rhodococcus sp. PBTS1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sugC_1	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily. (370 aa)
	ycjP_1	Inner membrane ABC transporter permease protein YcjP. (214 aa)
	ycjP_2	Inner membrane ABC transporter permease protein YcjP. (197 aa)
	sugC_2	Trehalose import ATP-binding protein SugC. (370 aa)
	sugC_3	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily. (387 aa)
	sugB_1	Trehalose transport system permease protein SugB. (276 aa)
	sugA	Trehalose transport system permease protein SugA. (313 aa)
	lpqY	Trehalose-binding lipoprotein LpqY. (457 aa)
	AMY21320.1	Putative ABC transporter-binding protein. (449 aa)
	ugpA	Sn-glycerol-3-phosphate transport system permease protein UgpA. (315 aa)
	sugB_2	Trehalose transport system permease protein SugB. (293 aa)

Your Current Organism:

Rhodococcus sp. PBTS1

NCBI taxonomy Id: 1653478
Other names: R. sp. PBTS 1, Rhodococcus sp. PBTS 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY21320.1	sugA	A3Q40_03972	A3Q40_02290	Putative ABC transporter-binding protein.	Trehalose transport system permease protein SugA.	0.894
AMY21320.1	sugB_1	A3Q40_03972	A3Q40_02289	Putative ABC transporter-binding protein.	Trehalose transport system permease protein SugB.	0.651
AMY21320.1	sugB_2	A3Q40_03972	A3Q40_03974	Putative ABC transporter-binding protein.	Trehalose transport system permease protein SugB.	0.998
AMY21320.1	sugC_1	A3Q40_03972	A3Q40_00004	Putative ABC transporter-binding protein.	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.	0.928
AMY21320.1	sugC_2	A3Q40_03972	A3Q40_00009	Putative ABC transporter-binding protein.	Trehalose import ATP-binding protein SugC.	0.658
AMY21320.1	sugC_3	A3Q40_03972	A3Q40_02288	Putative ABC transporter-binding protein.	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.	0.923
AMY21320.1	ugpA	A3Q40_03972	A3Q40_03973	Putative ABC transporter-binding protein.	Sn-glycerol-3-phosphate transport system permease protein UgpA.	0.999
AMY21320.1	ycjP_1	A3Q40_03972	A3Q40_00005	Putative ABC transporter-binding protein.	Inner membrane ABC transporter permease protein YcjP.	0.983
AMY21320.1	ycjP_2	A3Q40_03972	A3Q40_00008	Putative ABC transporter-binding protein.	Inner membrane ABC transporter permease protein YcjP.	0.983
lpqY	sugA	A3Q40_02291	A3Q40_02290	Trehalose-binding lipoprotein LpqY.	Trehalose transport system permease protein SugA.	0.997
lpqY	sugB_1	A3Q40_02291	A3Q40_02289	Trehalose-binding lipoprotein LpqY.	Trehalose transport system permease protein SugB.	0.999
lpqY	sugB_2	A3Q40_02291	A3Q40_03974	Trehalose-binding lipoprotein LpqY.	Trehalose transport system permease protein SugB.	0.775
lpqY	sugC_1	A3Q40_02291	A3Q40_00004	Trehalose-binding lipoprotein LpqY.	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.	0.716
lpqY	sugC_2	A3Q40_02291	A3Q40_00009	Trehalose-binding lipoprotein LpqY.	Trehalose import ATP-binding protein SugC.	0.716
lpqY	sugC_3	A3Q40_02291	A3Q40_02288	Trehalose-binding lipoprotein LpqY.	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.	0.985
lpqY	ugpA	A3Q40_02291	A3Q40_03973	Trehalose-binding lipoprotein LpqY.	Sn-glycerol-3-phosphate transport system permease protein UgpA.	0.773
lpqY	ycjP_1	A3Q40_02291	A3Q40_00005	Trehalose-binding lipoprotein LpqY.	Inner membrane ABC transporter permease protein YcjP.	0.794
lpqY	ycjP_2	A3Q40_02291	A3Q40_00008	Trehalose-binding lipoprotein LpqY.	Inner membrane ABC transporter permease protein YcjP.	0.795
sugA	AMY21320.1	A3Q40_02290	A3Q40_03972	Trehalose transport system permease protein SugA.	Putative ABC transporter-binding protein.	0.894
sugA	lpqY	A3Q40_02290	A3Q40_02291	Trehalose transport system permease protein SugA.	Trehalose-binding lipoprotein LpqY.	0.997