(6 nodes) Lignin metabolic process, and Aminobenzoate degradation network (Mitsuaria sp. 7)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANH67521.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	ANH67522.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	ANH67523.1	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	ANH67524.1	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	ANH67525.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	ANH69132.1	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)

Your Current Organism:

Mitsuaria sp. 7

NCBI taxonomy Id: 1658665
Other names: M. sp. 7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANH67521.1	ANH67522.1	ABE85_07975	ABE85_07985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
ANH67521.1	ANH67523.1	ABE85_07975	ABE85_07990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
ANH67521.1	ANH67524.1	ABE85_07975	ABE85_08000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
ANH67521.1	ANH67525.1	ABE85_07975	ABE85_08005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
ANH67521.1	ANH69132.1	ABE85_07975	ABE85_18980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ANH67522.1	ANH67521.1	ABE85_07985	ABE85_07975	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
ANH67522.1	ANH67523.1	ABE85_07985	ABE85_07990	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
ANH67522.1	ANH67524.1	ABE85_07985	ABE85_08000	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ANH67522.1	ANH67525.1	ABE85_07985	ABE85_08005	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
ANH67522.1	ANH69132.1	ABE85_07985	ABE85_18980	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
ANH67523.1	ANH67521.1	ABE85_07990	ABE85_07975	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
ANH67523.1	ANH67522.1	ABE85_07990	ABE85_07985	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
ANH67523.1	ANH67524.1	ABE85_07990	ABE85_08000	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ANH67523.1	ANH67525.1	ABE85_07990	ABE85_08005	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
ANH67523.1	ANH69132.1	ABE85_07990	ABE85_18980	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
ANH67524.1	ANH67521.1	ABE85_08000	ABE85_07975	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
ANH67524.1	ANH67522.1	ABE85_08000	ABE85_07985	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ANH67524.1	ANH67523.1	ABE85_08000	ABE85_07990	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ANH67524.1	ANH67525.1	ABE85_08000	ABE85_08005	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ANH67524.1	ANH69132.1	ABE85_08000	ABE85_18980	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828