STRINGSTRING
tpiA tpiA CIGN_0118 CIGN_0118 fcl fcl fcl-2 fcl-2 CIGN_0512 CIGN_0512 fbaA fbaA rpiB rpiB CIGN_0818 CIGN_0818 CIGN_0837 CIGN_0837 fbp fbp CIGN_1026 CIGN_1026 ptmE ptmE CIGN_1450 CIGN_1450
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tpiATriosephosphate isomerase; Pfam match to PF00121.14 TIM. (225 aa)
CIGN_0118GDP-mannose 4,6-dehydratase; Pfam match to PF16363.1 GDP_Man_Dehyd. (341 aa)
fclGDP-L-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. (349 aa)
fcl-2GDP-L-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. (349 aa)
CIGN_0512Pfam match to PF00596.17 Aldolase_II. (192 aa)
fbaAFructose-bisphosphate aldolase, class IIA; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. (354 aa)
rpiBAllose-6-phosphate isomerase / ribose-5-phosphate isomerase B; Bifunctional; Pfam match to PF02502.14 LacAB_rpiB. (149 aa)
CIGN_0818Collagenase-like peptidase, U32 family; Pfam match to PF01136.15 Peptidase_U32. (423 aa)
CIGN_0837Fumarylacetoacetate (FAA) hydrolase family protein; Pfam match to PF01557.14 FAA_hydrolase. (289 aa)
fbpFructose-1,6-bisphosphatase I; Pfam match to PF00316.16 FBPase; Belongs to the FBPase class 1 family. (277 aa)
CIGN_1026Phosphomannomutase/phosphoglucomutase; Bifunctional; Pfam matches to PF02878.12 PGM_PMM_I, and to PF02879.12 PGM_PMM_II, and to PF02880.12 PGM_PMM_III, and to PF00408.16 PGM_PMM_IV. (457 aa)
ptmEglucosamine-1-P guanylyltransferase; Pfam matches to PF00483.19 NTP_transferase, and to PF00571.24 CBS. (360 aa)
CIGN_1450Na+/H+ exchanger family protein; Pfam match to PF00999.17 Na_H_Exchanger. (388 aa)
Your Current Organism:
Campylobacter sp. NCTC 13003
NCBI taxonomy Id: 1660064
Other names: C. sp. NCTC 13003
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