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nirS nirS XM1_0694 XM1_0694 nirS-2 nirS-2 XM1_2025 XM1_2025 XM1_2026 XM1_2026 nirB-2 nirB-2 XM1_2028 XM1_2028 XM1_2031 XM1_2031 nirF nirF nirD-2 nirD-2 nirL nirL nirG nirG nirH nirH XM1_2037 XM1_2037 XM1_2038 XM1_2038 XM1_2138 XM1_2138 XM1_2139 XM1_2139 nosZ nosZ XM1_2141 XM1_2141 XM1_2142 XM1_2142 XM1_2143 XM1_2143 XM1_2144 XM1_2144 XM1_2145 XM1_2145 nosG nosG nosH nosH nosF nosF nosL nosL nosY nosY ubiE ubiE menA menA XM1_2153 XM1_2153 XM1_3097 XM1_3097 napC napC napB napB napH napH napG napG napA napA napD napD napF napF torC torC XM1_4017 XM1_4017 norD norD norQ norQ norB norB norC norC XM1_4023 XM1_4023 XM1_4024 XM1_4024 XM1_4190 XM1_4190 XM1_4458 XM1_4458 ubiE-2 ubiE-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nirSNitrite reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (568 aa)
XM1_0694Putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (319 aa)
nirS-2Nitrite reductase; Function of strongly homologous gene; enzyme. (540 aa)
XM1_2025Protein of unknown function; No homology to any previously reported sequences. (80 aa)
XM1_2026Cytochrome c-552; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter. (549 aa)
nirB-2Cytochrome c-552; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter. (336 aa)
XM1_2028Putative Plastocyanin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (110 aa)
XM1_2031Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter. (124 aa)
nirFProtein NirF; Function of strongly homologous gene; enzyme. (388 aa)
nirD-2Protein NirD; Function of strongly homologous gene; enzyme. (149 aa)
nirLProtein NirL; Function of strongly homologous gene; enzyme. (168 aa)
nirGProtein NirG; Function of strongly homologous gene; enzyme. (147 aa)
nirHProtein NirH; Function of strongly homologous gene; enzyme. (159 aa)
XM1_2037Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (380 aa)
XM1_2038Putative Nitrite reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (520 aa)
XM1_2138Putative Thiol-disulfide isomeras and thioredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (193 aa)
XM1_2139Homologs of previously reported genes of unknown function. (192 aa)
nosZNitrous oxide reductase; Function of strongly homologous gene; enzyme. (768 aa)
XM1_2141Protein of unknown function; No homology to any previously reported sequences. (88 aa)
XM1_2142Putative Cytochrome C4; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (205 aa)
XM1_2143Putative Cytochrome c553; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (252 aa)
XM1_2144Homologs of previously reported genes of unknown function. (223 aa)
XM1_2145Nitrous oxidase accessory protein; Homologs of previously reported genes of unknown function. (550 aa)
nosG4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; enzyme. (256 aa)
nosHPolyferredoxin; Function of strongly homologous gene; transporter. (320 aa)
nosFABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; enzyme. (281 aa)
nosLNitrous oxide reductase accessory protein; Function of strongly homologous gene; enzyme. (165 aa)
nosYMembrane protein nosY; Function of strongly homologous gene; transporter. (291 aa)
ubiEUbiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (243 aa)
menAPutative 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. (315 aa)
XM1_2153Putative Na+-dependent transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (286 aa)
XM1_3097Protein of unknown function; No homology to any previously reported sequences. (194 aa)
napCNitrate reductase, cytochrome c-type,periplasmic; Function of homologous gene experimentally demonstrated in an other organism; carrier. (219 aa)
napBNitrate reductase cytochrome c-type subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (151 aa)
napHFerredoxin-type protein NapH; Function of homologous gene experimentally demonstrated in an other organism; carrier. (317 aa)
napGFerredoxin-type protein napG homolog; Function of strongly homologous gene; carrier. (275 aa)
napANitrate reductase, periplasmic, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (827 aa)
napDChaperone NapD; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export. (131 aa)
napFFerredoxin-type protein, putative role in electron transfer to periplasmic nitrate reductase (NapA); Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family. (171 aa)
torCCytochrome c-type protein TorC; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the TorC/TorY family. (368 aa)
XM1_4017Conserved membrane protein of unknown function (Cytochrome C oxidase subunit IV prokaryotic 19-92); Homologs of previously reported genes of unknown function. (103 aa)
norDNorD protein required for nitric oxide reductase (Nor) activity; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (629 aa)
norQNorQ protein required for nitric oxide reductase (Nor) activity; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (260 aa)
norBNitric oxide reductase subunit B; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the heme-copper respiratory oxidase family. (446 aa)
norCNitric oxide reductase subunit C; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (149 aa)
XM1_4023CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator; Function of strongly homologous gene; enzyme. (273 aa)
XM1_4024Homologs of previously reported genes of unknown function. (134 aa)
XM1_4190Putative transcriptional regulator, Crp/Fnr family (fragment; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (118 aa)
XM1_4458Conserved protein of unknown function (DR1885-like metal-binding protein 1-147); Homologs of previously reported genes of unknown function. (207 aa)
ubiE-2Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (252 aa)
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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