(12 nodes) Cytochrome D1 heme domain, and Siroheme decarboxylase , AsnC-like ligand binding domain network (Magnetospirillum sp. XM1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nirS	Nitrite reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (568 aa)
	nirS-2	Nitrite reductase; Function of strongly homologous gene; enzyme. (540 aa)
	XM1_2031	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter. (124 aa)
	nirF	Protein NirF; Function of strongly homologous gene; enzyme. (388 aa)
	nirD-2	Protein NirD; Function of strongly homologous gene; enzyme. (149 aa)
	nirL	Protein NirL; Function of strongly homologous gene; enzyme. (168 aa)
	nirG	Protein NirG; Function of strongly homologous gene; enzyme. (147 aa)
	nirH	Protein NirH; Function of strongly homologous gene; enzyme. (159 aa)
	XM1_2037	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (380 aa)
	XM1_2038	Putative Nitrite reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (520 aa)
	norB	Nitric oxide reductase subunit B; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the heme-copper respiratory oxidase family. (446 aa)
	norC	Nitric oxide reductase subunit C; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (149 aa)

Your Current Organism:

Magnetospirillum sp. XM1

NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
XM1_2031	XM1_2037	XM1_2031	XM1_2037	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.967
XM1_2031	XM1_2038	XM1_2031	XM1_2038	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative Nitrite reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.995
XM1_2031	nirD-2	XM1_2031	XM1_2033	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Protein NirD; Function of strongly homologous gene; enzyme.	0.981
XM1_2031	nirF	XM1_2031	XM1_2032	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Protein NirF; Function of strongly homologous gene; enzyme.	0.996
XM1_2031	nirG	XM1_2031	XM1_2035	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Protein NirG; Function of strongly homologous gene; enzyme.	0.993
XM1_2031	nirH	XM1_2031	XM1_2036	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Protein NirH; Function of strongly homologous gene; enzyme.	0.992
XM1_2031	nirL	XM1_2031	XM1_2034	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Protein NirL; Function of strongly homologous gene; enzyme.	0.981
XM1_2031	nirS	XM1_2031	XM1_0428	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Nitrite reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.839
XM1_2031	nirS-2	XM1_2031	XM1_2022	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Nitrite reductase; Function of strongly homologous gene; enzyme.	0.865
XM1_2031	norB	XM1_2031	XM1_4021	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Nitric oxide reductase subunit B; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the heme-copper respiratory oxidase family.	0.902
XM1_2031	norC	XM1_2031	XM1_4022	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Nitric oxide reductase subunit C; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.758
XM1_2037	XM1_2031	XM1_2037	XM1_2031	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.967
XM1_2037	XM1_2038	XM1_2037	XM1_2038	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Nitrite reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.971
XM1_2037	nirD-2	XM1_2037	XM1_2033	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Protein NirD; Function of strongly homologous gene; enzyme.	0.970
XM1_2037	nirF	XM1_2037	XM1_2032	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Protein NirF; Function of strongly homologous gene; enzyme.	0.967
XM1_2037	nirG	XM1_2037	XM1_2035	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Protein NirG; Function of strongly homologous gene; enzyme.	0.971
XM1_2037	nirH	XM1_2037	XM1_2036	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Protein NirH; Function of strongly homologous gene; enzyme.	0.969
XM1_2037	nirL	XM1_2037	XM1_2034	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Protein NirL; Function of strongly homologous gene; enzyme.	0.968
XM1_2037	nirS	XM1_2037	XM1_0428	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Nitrite reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.813
XM1_2037	nirS-2	XM1_2037	XM1_2022	Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Nitrite reductase; Function of strongly homologous gene; enzyme.	0.843