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XM1_0138 XM1_0138 XM1_0247 XM1_0247 XM1_0562 XM1_0562 XM1_0563 XM1_0563 XM1_0565 XM1_0565 XM1_1306 XM1_1306 XM1_1370 XM1_1370 XM1_1371 XM1_1371 fbpA fbpA XM1_1790 XM1_1790 XM1_1791 XM1_1791 XM1_1792 XM1_1792 XM1_1793 XM1_1793 XM1_1794 XM1_1794 XM1_1796 XM1_1796 XM1_1797 XM1_1797 cbbY cbbY XM1_1799 XM1_1799 XM1_2244 XM1_2244 mamJ mamJ cpoB cpoB pal pal tolB tolB XM1_4122 XM1_4122 tolR tolR tolQ tolQ XM1_4125 XM1_4125 ruvB ruvB ruvA ruvA ruvC ruvC XM1_4129 XM1_4129 XM1_4132 XM1_4132 XM1_4133 XM1_4133 XM1_4134 XM1_4134 XM1_4135 XM1_4135 XM1_4136 XM1_4136 XM1_4137 XM1_4137 XM1_4400 XM1_4400 XM1_4401 XM1_4401 XM1_4402 XM1_4402 XM1_4403 XM1_4403 XM1_4404 XM1_4404 XM1_4405 XM1_4405 exbB exbB exbD exbD exbD2 exbD2 XM1_4457 XM1_4457 XM1_4536 XM1_4536 XM1_4538 XM1_4538 XM1_4539 XM1_4539 XM1_4540 XM1_4540 XM1_4541 XM1_4541 XM1_4542 XM1_4542 XM1_4543 XM1_4543 XM1_4544 XM1_4544 XM1_4545 XM1_4545 XM1_4546 XM1_4546 XM1_4701 XM1_4701 XM1_4702 XM1_4702
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XM1_0138Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (707 aa)
XM1_0247Homologs of previously reported genes of unknown function. (128 aa)
XM1_0562Homologs of previously reported genes of unknown function. (112 aa)
XM1_0563Uncharacterized protein; Homologs of previously reported genes of unknown function. (187 aa)
XM1_0565Putative Polyferredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (470 aa)
XM1_1306Homologs of previously reported genes of unknown function. (124 aa)
XM1_1370Iron(III) transport system permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (552 aa)
XM1_1371Iron(III)-transport system ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily. (353 aa)
fbpAIron(III) ABC transporter, periplasmic iron(III)-binding protein; Function of strongly homologous gene; transporter. (336 aa)
XM1_1790Putative Dehydrogenase（NAD(P)-binding domain,2-249） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (250 aa)
XM1_1791Protein of unknown function; No homology to any previously reported sequences. (151 aa)
XM1_1792Homologs of previously reported genes of unknown function. (136 aa)
XM1_1793Putative TonB-dependent receptor plug（TonB-dependent receptor, beta-barrel,167-669） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (670 aa)
XM1_1794Uncharacterized protein; Homologs of previously reported genes of unknown function. (237 aa)
XM1_1796Homologs of previously reported genes of unknown function. (143 aa)
XM1_1797Conserved exported protein of unknown function(Cupredoxin,6-161); Homologs of previously reported genes of unknown function. (163 aa)
cbbYHaloacid dehalogenase-like hydrolase, protein CbbY, plasmid(HAD-like domain,1-211); Function of strongly homologous gene; enzyme. (221 aa)
XM1_1799Putative uracil-DNA glycosylase(Uracil-DNA glycosylase-like,4-195); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (195 aa)
XM1_2244Putative High-affinity Fe2+/Pb2+ permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. (269 aa)
mamJMagnetosome protein MamJ; Function of strongly homologous gene; transporter. (386 aa)
cpoBConserved protein of unknown function （Tetratricopeptide-like helical 198-314） Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (330 aa)
palPeptidoglycan-associated outer membrane lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (161 aa)
tolBProtein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (447 aa)
XM1_4122Periplasmic protein TonB, links inner and outer membranes; Function of strongly homologous gene; membrane component. (331 aa)
tolRProtein TolR; Function of strongly homologous gene; transporter. (154 aa)
tolQMembrane spanning protein in TolA-TolQ-TolR complex; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (241 aa)
XM1_4125Putative enzyme (Tol-Pal system-associated acyl-CoA thioesterase 4-130); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (140 aa)
ruvBATP-dependent DNA helicase, component of RuvABC resolvasome; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (347 aa)
ruvAHolliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (210 aa)
ruvCCrossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC); Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (166 aa)
XM1_4129Conserved protein of unknown function (TIGR01033: DNA-binding regulatory protein, YebC/Pm 1-239); Homologs of previously reported genes of unknown function. (249 aa)
XM1_4132Conserved protein of unknown function （Metallo-dependent phosphatases 1-262） Homologs of previously reported genes of unknown function. (272 aa)
XM1_4133Putative 5-formyltetrahydrofolate cyclo-ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. (195 aa)
XM1_4134Conserved protein of unknown function （Cell division protein ZapA-like 3-104） Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. (108 aa)
XM1_4135Homologs of previously reported genes of unknown function. (78 aa)
XM1_4136Homologs of previously reported genes of unknown function. (162 aa)
XM1_4137Homologs of previously reported genes of unknown function. (108 aa)
XM1_4400Homologs of previously reported genes of unknown function. (81 aa)
XM1_4401Homologs of previously reported genes of unknown function. (81 aa)
XM1_4402Homologs of previously reported genes of unknown function. (142 aa)
XM1_4403TonB-dependent receptor; Function of strongly homologous gene; receptor. (701 aa)
XM1_4404Conserved exported protein of unknown function (Sialidases 52-296); Homologs of previously reported genes of unknown function. (408 aa)
XM1_4405Periplasmic protein TonB; Function of strongly homologous gene; membrane component. (214 aa)
exbBBiopolymer transport protein ExbB; Function of strongly homologous gene; transporter. (266 aa)
exbDBiopolymer transport protein exbD1; Function of strongly homologous gene; transporter. (143 aa)
exbD2Biopolymer transport protein exbD2; Function of strongly homologous gene; transporter. (138 aa)
XM1_4457Putative heme iron utilization protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (248 aa)
XM1_4536Protein of unknown function; No homology to any previously reported sequences. (473 aa)
XM1_4538Protein of unknown function; No homology to any previously reported sequences. (122 aa)
XM1_4539Conserved protein of unknown function (DNA breaking-rejoining enzymes 199-371; Homologs of previously reported genes of unknown function. (371 aa)
XM1_4540Protein of unknown function; No homology to any previously reported sequences. (108 aa)
XM1_4541Protein of unknown function; No homology to any previously reported sequences. (37 aa)
XM1_4542TonB-dependent receptor; Function of strongly homologous gene; transporter. (682 aa)
XM1_4543Putative TonB family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (250 aa)
XM1_4544Putative ABC transporter, periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (423 aa)
XM1_4545Conserved protein of unknown function (Cytochrome c domain 279-445); Homologs of previously reported genes of unknown function. (445 aa)
XM1_4546Putative transcriptional regulator, ModE family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (137 aa)
XM1_4701Outer membrane protein and related peptidoglycan-associated lipo protein; Function of strongly homologous gene; transporter. (168 aa)
XM1_4702Putative coenzyme PQQ synthesis protein E; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (372 aa)
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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