STRINGSTRING
XM1_3725 XM1_3725 XM1_0867 XM1_0867 xseA xseA XM1_1171 XM1_1171 XM1_2262 XM1_2262 xseB xseB XM1_3012 XM1_3012 xthA xthA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XM1_3725Uncharacterized protein; Homologs of previously reported genes of unknown function. (158 aa)
XM1_0867Putative Exodeoxyribonuclease III; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (263 aa)
xseAExodeoxyribonuclease 7 large subunit(Exonuclease VII, large subunit,15-384) Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (501 aa)
XM1_1171Conserved exported protein of unknown function(LTXXQ motif family protein,52-146); Homologs of previously reported genes of unknown function. (168 aa)
XM1_2262Exported protein of unknown function; No homology to any previously reported sequences. (761 aa)
xseBExonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (81 aa)
XM1_3012Protein of unknown function; No homology to any previously reported sequences. (1470 aa)
xthAExonuclease III; Function of strongly homologous gene; enzyme. (258 aa)
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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