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PIP PIP XM1_0275 XM1_0275 pnp pnp rutE rutE XM1_0646 XM1_0646 tpl tpl rph rph yggV yggV xseA xseA dut dut XM1_1171 XM1_1171 XM1_1281 XM1_1281 XM1_1292 XM1_1292 rnhB rnhB XM1_1527 XM1_1527 XM1_1530 XM1_1530 XM1_1616 XM1_1616 XM1_1673 XM1_1673 XM1_1946 XM1_1946 rhlE rhlE XM1_2014 XM1_2014 rhlE-2 rhlE-2 XM1_2288 XM1_2288 xdhA-2 xdhA-2 XM1_2702 XM1_2702 XM1_2742 XM1_2742 xseB xseB XM1_2780 XM1_2780 XM1_2898 XM1_2898 XM1_3012 XM1_3012 mazG mazG surE surE XM1_3294 XM1_3294 XM1_3510 XM1_3510 XM1_3524 XM1_3524 XM1_3725 XM1_3725 XM1_3814 XM1_3814 XM1_3865 XM1_3865 XM1_4189 XM1_4189 XM1_4194 XM1_4194 hmeD hmeD XM1_4322 XM1_4322 rnhA rnhA XM1_4496 XM1_4496
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
PIPProline iminopeptidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the peptidase S33 family. (313 aa)
XM1_0275Putative ATP-dependent RNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the DEAD box helicase family. (594 aa)
pnpPolynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (720 aa)
rutEOxidoreductase subunit of the alternative pyrimidine degradation pathway; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (196 aa)
XM1_0646Protein of unknown function; No homology to any previously reported sequences. (62 aa)
tplTyrosine phenol-lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (482 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (239 aa)
yggVdITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (206 aa)
xseAExodeoxyribonuclease 7 large subunit(Exonuclease VII, large subunit,15-384) Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (501 aa)
dutDeoxyuridinetriphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. (151 aa)
XM1_1171Conserved exported protein of unknown function(LTXXQ motif family protein,52-146); Homologs of previously reported genes of unknown function. (168 aa)
XM1_1281Homologs of previously reported genes of unknown function. (96 aa)
XM1_1292Beta-lactamase OXY-2(Beta-lactamase/transpeptidase-like, 38-293) Function of strongly homologous gene; enzyme. (295 aa)
rnhBRibonuclease HII, degrades RNA of DNA-RNA hybrids (Ribonuclease H-like domain; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (204 aa)
XM1_1527Putative translation initiation inhibitor(Endoribonuclease L-PSP/chorismate mutase-like,1-123); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (124 aa)
XM1_1530Putative flagellum biosynthesis repressor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (141 aa)
XM1_1616Conserved protein of unknown function(Uncharacterised conserved protein UCP020408,314-408); Homologs of previously reported genes of unknown function. (411 aa)
XM1_1673Putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase(5'-Nucleotidase/apyrase,1-494); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 5'-nucleotidase family. (495 aa)
XM1_1946Putative Hydrolase or acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (279 aa)
rhlEATP-dependent RNA helicase RhlE; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DEAD box helicase family. (567 aa)
XM1_2014Putative Amidase related to nicotinamidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (180 aa)
rhlE-2RNA helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DEAD box helicase family. (483 aa)
XM1_2288Putative 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (379 aa)
xdhA-2Xanthine dehydrogenase, small subunit (fragment of part 1); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (284 aa)
XM1_2702Putative Nucleoside 2-deoxyribosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (183 aa)
XM1_2742Putative carbon monoxide dehydrogenase accessory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (346 aa)
xseBExonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (81 aa)
XM1_2780Putative Aerobic-type carbon monoxide dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (261 aa)
XM1_2898Putative 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (377 aa)
XM1_3012Protein of unknown function; No homology to any previously reported sequences. (1470 aa)
mazGNucleoside triphosphate pyrophosphohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (278 aa)
surEBroad specificity 5'(3')-nucleotidase and polyphosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (259 aa)
XM1_3294Deoxyguanosinetriphosphate triphosphohydrolase-like protein; Function of strongly homologous gene; enzyme; Belongs to the dGTPase family. Type 2 subfamily. (397 aa)
XM1_3510Putative NADH pyrophosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (306 aa)
XM1_3524Putative Carboxylesterase BioH; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (231 aa)
XM1_3725Uncharacterized protein; Homologs of previously reported genes of unknown function. (158 aa)
XM1_3814Uncharacterized protein; Homologs of previously reported genes of unknown function. (120 aa)
XM1_3865Uncharacterized protein; Homologs of previously reported genes of unknown function. (133 aa)
XM1_4189Putative uridine phosphorylase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (44 aa)
XM1_4194Putative heme oxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (184 aa)
hmeDHdr-like menaquinol oxidoreductase iron-sulfur subunit 2 (DsrK); Function of strongly homologous gene; enzyme. (500 aa)
XM1_4322Putative esterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (256 aa)
rnhARibonuclease HI, degrades RNA of DNA-RNA hybrids; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (156 aa)
XM1_4496Homologs of previously reported genes of unknown function. (300 aa)
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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