STRINGSTRING
XM1_3683 XM1_3683 bacA bacA XM1_4065 XM1_4065 mrdB mrdB XM1_4557 XM1_4557 murI-2 murI-2 XM1_0372 XM1_0372 murJ murJ ddpX ddpX XM1_0825 XM1_0825 XM1_0877 XM1_0877 XM1_0888 XM1_0888 XM1_1061 XM1_1061 uppP1 uppP1 folC folC XM1_1351 XM1_1351 bamD bamD ddlB ddlB murB murB murC murC murG murG murD murD mraY mraY murF murF murE murE XM1_1609 XM1_1609 lptD lptD murI murI XM1_1713 XM1_1713 XM1_1887 XM1_1887 gcaD gcaD XM1_1967 XM1_1967 murA murA mltG mltG rlpA rlpA rlpA-2 rlpA-2 XM1_3053 XM1_3053 XM1_3132 XM1_3132 XM1_3144 XM1_3144 dacC dacC rlpA-3 rlpA-3 bamA bamA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
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Your Input:
XM1_3683Protein of unknown function; No homology to any previously reported sequences. (268 aa)
bacAUndecaprenyl pyrophosphate phosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (264 aa)
XM1_4065Conserved protein of unknown function (Lysozyme-like domain 89-242); Homologs of previously reported genes of unknown function. (246 aa)
mrdBCell wall shape-determining protein mrdB; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. (387 aa)
XM1_4557Putative glycosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (481 aa)
murI-2Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. (276 aa)
XM1_0372Putative phosphotransferase related to Ser/Thr protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (340 aa)
murJProtein MurJ homolog; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (539 aa)
ddpXD-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (190 aa)
XM1_0825Putative Membrane-bound lytic murein transglycosylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (392 aa)
XM1_0877Homologs of previously reported genes of unknown function. (189 aa)
XM1_0888Putative UDP-N-acetylmuramyl pentapeptide phosphotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (338 aa)
XM1_1061UDP-N-acetylmuramate-alanine ligase; Function of strongly homologous gene; enzyme. (463 aa)
uppP1Undecaprenyl-diphosphatase 1(Bacitracin resistance protein BacA,6-257); Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (265 aa)
folCBifunctional folylpolyglutamate synthase and dihydrofolate synthase; Function of strongly homologous gene; putative enzyme; Belongs to the folylpolyglutamate synthase family. (434 aa)
XM1_1351D-alanyl-D-alanine carboxypeptidase(Beta-lactamase/transpeptidase-like, 14-271); Function of strongly homologous gene; enzyme; Belongs to the peptidase S11 family. (429 aa)
bamDOuter membrane protein assembly factor BamD(Outer membrane protein assembly factor BamD,14-245); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (306 aa)
ddlBD-alanine:D-alanine ligase(D-alanine--D-alanine ligase,1-304) Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (306 aa)
murBUDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (305 aa)
murCUDP-N-acetylmuramate:L-alanine ligase(UDP-N-acetylmuramate-alanine ligase,1-460) Cell wall formation; Belongs to the MurCDEF family. (476 aa)
murGUndecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (371 aa)
murDUDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (457 aa)
mraYPhospho-N-acetylmuramoyl-pentapeptide-transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (362 aa)
murFUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (466 aa)
murEUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (486 aa)
XM1_1609Chaperone SurA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (422 aa)
lptDLPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (924 aa)
murIGlutamate racemase(Glutamate racemase,15-297); Provides the (R)-glutamate required for cell wall biosynthesis. (297 aa)
XM1_1713Protein of unknown function; No homology to any previously reported sequences. (1888 aa)
XM1_1887Protein of unknown function; No homology to any previously reported sequences. (221 aa)
gcaDBifunctional protein GlmU [Includes: UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. (449 aa)
XM1_1967Uncharacterized protein; Homologs of previously reported genes of unknown function. (443 aa)
murAUDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (432 aa)
mltGPutative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (324 aa)
rlpAPutative lipoprotein A (fragment); Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (93 aa)
rlpA-2Putative lipoprotein A (fragment); Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (132 aa)
XM1_3053Putative D-alanyl-D-alanine carboxypeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the peptidase S11 family. (417 aa)
XM1_3132Conserved protein of unknown function(containing Lipoprotein SmpA/OmlA domain,31-106;); Homologs of previously reported genes of unknown function. (152 aa)
XM1_3144Uncharacterized protein; Homologs of previously reported genes of unknown function. (368 aa)
dacCD-alanyl-D-alanine carboxypeptidase; Function of strongly homologous gene; enzyme; Belongs to the peptidase S11 family. (389 aa)
rlpA-3Putative Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (323 aa)
bamAPutative outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (755 aa)
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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