STRINGSTRING
XM1_2419 XM1_2419 XM1_4327 XM1_4327 XM1_3805 XM1_3805 XM1_0564 XM1_0564
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XM1_2419Putative Carbohydrate-selective porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (465 aa)
XM1_4327Putative carbohydrate-selective porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure. (461 aa)
XM1_3805Carbohydrate-selective porin; Function of strongly homologous gene; transporter. (465 aa)
XM1_0564Porin; Homologs of previously reported genes of unknown function. (486 aa)
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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