STRINGSTRING
XM1_4674 XM1_4674 XM1_4723 XM1_4723 XM1_0084 XM1_0084 XM1_0189 XM1_0189 xerC xerC XM1_0443 XM1_0443 XM1_0460 XM1_0460 XM1_0488 XM1_0488 XM1_0499 XM1_0499 XM1_0650 XM1_0650 XM1_0718 XM1_0718 XM1_0722 XM1_0722 xerD xerD XM1_1623 XM1_1623 XM1_1637 XM1_1637 XM1_1759 XM1_1759 XM1_2230 XM1_2230 XM1_2279 XM1_2279 XM1_2588 XM1_2588 int int XM1_2807 XM1_2807 XM1_2825 XM1_2825 XM1_2934 XM1_2934 XM1_2960 XM1_2960 XM1_3785 XM1_3785 XM1_3811 XM1_3811 XM1_4202 XM1_4202 XM1_4539 XM1_4539 XM1_4623 XM1_4623
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XM1_4674Putative phage integrase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (407 aa)
XM1_4723Putative integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (395 aa)
XM1_0084Putative integrase/recombinase y4qK; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (285 aa)
XM1_0189Putative phage-related integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (474 aa)
xerCSite-specific tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (314 aa)
XM1_0443Putative defective integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (442 aa)
XM1_0460Homologs of previously reported genes of unknown function. (193 aa)
XM1_0488Conserved protein of unknown function （Phage_integrase fragment） Homologs of previously reported genes of unknown function; Belongs to the 'phage' integrase family. (438 aa)
XM1_0499Integrase; Function of strongly homologous gene; enzyme. (188 aa)
XM1_0650Protein of unknown function （DNA breaking-rejoining enzymes domain） No homology to any previously reported sequences. (567 aa)
XM1_0718Phage integrase family protein; Function of strongly homologous gene; enzyme. (189 aa)
XM1_0722Homologs of previously reported genes of unknown function; Belongs to the 'phage' integrase family. (462 aa)
xerDTyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (308 aa)
XM1_1623Protein of unknown function (Integrase-like, catalytic core 264-462); No homology to any previously reported sequences. (529 aa)
XM1_1637Putative Integrase（ntegrase-like, catalytic core,5-186） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (189 aa)
XM1_1759Putative Integrase(ntegrase-like, catalytic core,170-342); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (349 aa)
XM1_2230Putative integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (392 aa)
XM1_2279Putative integrase/recombinase y4qK; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (297 aa)
XM1_2588Putative Prophage lambda integrase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (258 aa)
intPutative Integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin; Belongs to the 'phage' integrase family. (365 aa)
XM1_2807Protein of unknown function (Integrase-like, catalytic core 244-428); No homology to any previously reported sequences. (532 aa)
XM1_2825Putative Integrase-like domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (193 aa)
XM1_2934Conserved protein of unknown function (Integrase-like, catalytic core 276-428); Homologs of previously reported genes of unknown function. (446 aa)
XM1_2960Putative Integrase-like domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (161 aa)
XM1_3785Phage_integrase domain-containing protein; No homology to any previously reported sequences. (425 aa)
XM1_3811Phage_integrase domain-containing protein; No homology to any previously reported sequences. (423 aa)
XM1_4202Conserved protein of unknown function (Integrase-like, catalytic core 247-449); Homologs of previously reported genes of unknown function. (567 aa)
XM1_4539Conserved protein of unknown function (DNA breaking-rejoining enzymes 199-371; Homologs of previously reported genes of unknown function. (371 aa)
XM1_4623Putative phage Integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the 'phage' integrase family. (365 aa)
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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