(6 nodes) Exonuclease, RNase T/DNA polymerase III network (Magnetospirillum sp. XM1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	XM1_3964	DNA polymerase III; Function of strongly homologous gene; enzyme. (676 aa)
	XM1_0082	Conserved protein of unknown function（contain Ribonuclease H-like domain） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (180 aa)
	XM1_0447	Type I restriction enzyme R Protein; Subunit R is required for both nuclease and ATPase activities, but not for modification. (789 aa)
	dnaQ	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (230 aa)
	XM1_0890	Conserved protein of unknown function （contain Ribonuclease H-like domain） Homologs of previously reported genes of unknown function. (185 aa)
	XM1_4743	Putative DNA polymerase III, epsilon subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (215 aa)

Your Current Organism:

Magnetospirillum sp. XM1

NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
XM1_0082	XM1_3964	XM1_0082	XM1_3964	Conserved protein of unknown function（contain Ribonuclease H-like domain） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	DNA polymerase III; Function of strongly homologous gene; enzyme.	0.918
XM1_0082	XM1_4743	XM1_0082	XM1_4743	Conserved protein of unknown function（contain Ribonuclease H-like domain） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative DNA polymerase III, epsilon subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.927
XM1_0082	dnaQ	XM1_0082	XM1_0829	Conserved protein of unknown function（contain Ribonuclease H-like domain） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.921
XM1_3964	XM1_0082	XM1_3964	XM1_0082	DNA polymerase III; Function of strongly homologous gene; enzyme.	Conserved protein of unknown function（contain Ribonuclease H-like domain） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.918
XM1_3964	XM1_4743	XM1_3964	XM1_4743	DNA polymerase III; Function of strongly homologous gene; enzyme.	Putative DNA polymerase III, epsilon subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.920
XM1_3964	dnaQ	XM1_3964	XM1_0829	DNA polymerase III; Function of strongly homologous gene; enzyme.	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.923
XM1_4743	XM1_0082	XM1_4743	XM1_0082	Putative DNA polymerase III, epsilon subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved protein of unknown function（contain Ribonuclease H-like domain） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.927
XM1_4743	XM1_3964	XM1_4743	XM1_3964	Putative DNA polymerase III, epsilon subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	DNA polymerase III; Function of strongly homologous gene; enzyme.	0.920
XM1_4743	dnaQ	XM1_4743	XM1_0829	Putative DNA polymerase III, epsilon subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.920
dnaQ	XM1_0082	XM1_0829	XM1_0082	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	Conserved protein of unknown function（contain Ribonuclease H-like domain） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.921
dnaQ	XM1_3964	XM1_0829	XM1_3964	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	DNA polymerase III; Function of strongly homologous gene; enzyme.	0.923
dnaQ	XM1_4743	XM1_0829	XM1_4743	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	Putative DNA polymerase III, epsilon subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.920