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| | dnaA | Chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (467 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (392 aa) |
| | XM1_0028 | Homologs of previously reported genes of unknown function. (310 aa) |
| | XM1_0030 | Type III restriction enzyme, res subunit; Function of strongly homologous gene; enzyme. (559 aa) |
| | parA | Conserved protein of unknown function; Function of strongly homologous gene; putative factor. (786 aa) |
| | XM1_0043 | Bacteriophage tail assembly protein; No homology to any previously reported sequences. (664 aa) |
| | XM1_0125 | Putative ATPase involved in chromosome partitioning; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (207 aa) |
| | nrtD | Putative Ti-type conjugative transfer system, TraG-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (553 aa) |
| | cobB | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. (441 aa) |
| | flbD | Conserved protein of unknown function; Function of homologous gene experimentally demonstrated in an other organism; regulator. (458 aa) |
| | flhF | Protein of unknown function (Methyl-accepting chemotaxis protein (MCP) signaling domain 365-548); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (333 aa) |
| | fleN | Flagellar number regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator. (265 aa) |
| | recA | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (359 aa) |
| | XM1_0232 | ABC-type transport system; Function of strongly homologous gene; transporter. (272 aa) |
| | XM1_0252 | Putative ATPase, AAA family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (281 aa) |
| | XM1_0261 | Putative ATP-dependent protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (819 aa) |
| | XM1_0270 | Putative double-strand break repair protein, AddB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (974 aa) |
| | XM1_0273 | Putative ABC-type protease/lipase transport system, ATPase and permease component protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (673 aa) |
| | XM1_0275 | Putative ATP-dependent RNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the DEAD box helicase family. (594 aa) |
| | ffh | Signal Recognition Particle (SRP) component with 4.5S RNA (ffs); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex [...] (454 aa) |
| | infB | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (872 aa) |
| | obgE | GTPase involved in cell partioning and DNA repair; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. (417 aa) |
| | msbA | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Belongs to the ABC transporter superfamily. Lipid exporter (TC 3.A.1.106) family. (594 aa) |
| | lpxK | Tetraacyldisaccharide 4'-kinase(Lipid A 4'-kinase); Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). (325 aa) |
| | dnaX | DNA polymerase III, gamma/tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (600 aa) |
| | XM1_0328 | Putative argK, membrane ATPase/protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (329 aa) |
| | atpD | Membrane-bound ATP synthase, F1 sector, beta-subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (474 aa) |
| | atpA | F1 sector of membrane-bound ATP synthase, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. (509 aa) |
| | recQ | ATP-dependent DNA helicase RecQ; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (608 aa) |
| | priA | Primosomal protein N'(replication factor Y); Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (733 aa) |
| | XM1_0371 | TRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Function of strongly homologous gene; enzyme. (156 aa) |
| | XM1_0375 | Putative ATP-dependent DNA/RNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (808 aa) |
| | XM1_0406 | Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (320 aa) |
| | XM1_0431 | Putative ATP-dependent helicase/nuclease subunit A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the helicase family. UvrD subfamily. (1154 aa) |
| | XM1_0432 | Putative ATPase (MoxR-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (330 aa) |
| | XM1_0447 | Type I restriction enzyme R Protein; Subunit R is required for both nuclease and ATPase activities, but not for modification. (789 aa) |
| | XM1_0486 | Putative Insertion sequence IS21 ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (279 aa) |
| | XM1_0532 | Putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components, yejF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the ABC transporter superfamily. (533 aa) |
| | XM1_0539 | Homologs of previously reported genes of unknown function. (197 aa) |
| | XM1_0544 | Conserved protein of unknown function (containing ATPase/P-loop-containing domain); Displays ATPase and GTPase activities. (305 aa) |
| | XM1_0545 | Putative HPr kinase/phosphorylase, regulates carbohydrate metabolism; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (143 aa) |
| | XM1_0577 | Putative ABC transporter ATP-binding protein BAB1_1388; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (215 aa) |
| | XM1_0589 | Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (229 aa) |
| | bipA | GTP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; factor. (606 aa) |
| | cmk | Cytidylate kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (211 aa) |
| | XM1_0632 | Homologs of previously reported genes of unknown function. (494 aa) |
| | XM1_0644 | Homologs of previously reported genes of unknown function. (509 aa) |
| | XM1_0649 | Protein of unknown function; No homology to any previously reported sequences. (593 aa) |
| | engB | GTP-binding protein EngB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. (187 aa) |
| | ychF | Putative GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (367 aa) |
| | cobU | Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. (173 aa) |
| | cobW | Protein CobW; Function of strongly homologous gene; enzyme. (335 aa) |
| | ftsE | Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (240 aa) |
| | XM1_0757 | Putative enzyme with nucleoside triphosphate hydrolase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (329 aa) |
| | pstB | Phosphate transporter subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (258 aa) |
| | cobO | Cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids. (201 aa) |
| | XM1_0810 | Putative Mg chelatase-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (504 aa) |
| | hslU | Molecular chaperone and ATPase component of HslUV protease; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (442 aa) |
| | coaE | Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. (211 aa) |
| | rho | Transcription termination factor; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (418 aa) |
| | mnmE | tRNA modification GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (441 aa) |
| | parA-2 | Chromosome partitioning protein ParA; Function of homologous gene experimentally demonstrated in an other organism; factor. (266 aa) |
| | ftsK | DNA translocase FtsK; Function of homologous gene experimentally demonstrated in an other organism; cell process. (806 aa) |
| | XM1_0878 | Putative DNA polymerase III, delta subunit (holA); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (340 aa) |
| | XM1_0908 | Putative adenylyl-sulfate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (174 aa) |
| | XM1_0921 | Putative ABC transporter ATP-binding protein/permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (598 aa) |
| | XM1_0929 | Putative adenylyl-sulfate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the APS kinase family. (184 aa) |
| | pstB-2 | Phosphate transporter subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (278 aa) |
| | XM1_0949 | Protein of unknown function (P-loop containing nucleoside triphosphate hydrolyses 6-329); No homology to any previously reported sequences. (495 aa) |
| | aroK | Shikimate kinase(Shikimate kinase,126-281); Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (290 aa) |
| | XM1_1079 | Putative ABC-type multidrug transport system(ABC transporter-like,46-164); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (308 aa) |
| | prfC | Peptide chain release factor RF-3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (528 aa) |
| | ftsY | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components. (334 aa) |
| | ccmA | Cytochrome c biogenesis ATP-binding export protein CcmA(ABC transporter, haem export, CcmA,11-211); Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (221 aa) |
| | XM1_1205 | ABC transporter ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. (264 aa) |
| | mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (884 aa) |
| | cobQ | Cobyric acid synthase(Cobyric acid synthase CobQ,7-475); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (484 aa) |
| | XM1_1259 | ATP-binding component of ABC superfamily（ABC transporter-like,48-172） Function of strongly homologous gene; transporter. (276 aa) |
| | smc | Chromosome partition protein Smc(Structural maintenance of chromosomes protein, prokaryotic,3-1142); Required for chromosome condensation and partitioning. Belongs to the SMC family. (1155 aa) |
| | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ClpA/ClpB family. (764 aa) |
| | cpaE | Flp pilus assembly protein, ATPase CpaE; Function of strongly homologous gene; transporter. (396 aa) |
| | XM1_1362 | Flp pilus assembly protein, ATPase CpaF(Type II secretion system protein E,108-384); Function of strongly homologous gene; enzyme. (460 aa) |
| | XM1_1371 | Iron(III)-transport system ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily. (353 aa) |
| | XM1_1382 | Conserved protein of unknown function（Polyphosphate:AMP phosphotransferase,2-501） Homologs of previously reported genes of unknown function. (510 aa) |
| | XM1_1398 | AFG1-like ATPase; Function of strongly homologous gene; enzyme. (387 aa) |
| | lptB | Lipopolysaccharide export system ATP-binding protein; Function of strongly homologous gene; transporter. (265 aa) |
| | aroK-2 | Fragment of bifunctional: shikimate kinase (N-terminal); Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (194 aa) |
| | XM1_1433 | Putative enzyme with nucleoside triphosphate hydrolase domain (PhoH-like protein,43-243); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (245 aa) |
| | cobS-2 | Aerobic cobaltochelatase subunit CobS; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (333 aa) |
| | secA | Preprotein translocase subunit, ATPase(SecA DEAD-like, N-terminal,6-388;SecA Wing/Scaffold,612-889); Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. (901 aa) |
| | lepA | GTP-binding membrane protein(Elongation factor, Elongation factor 4,6-597); Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (600 aa) |
| | recN | DNA repair protein RecN(DNA recombination/repair protein RecN,1-552); May be involved in recombinational repair of damaged DNA. (553 aa) |
| | XM1_1539 | Putative ATPase MipZ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (272 aa) |
| | uvrB | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] (703 aa) |
| | mobB | Molybdopterin-guanine dinucleotide biosynthesis adapter protein; Function of strongly homologous gene; factor. (164 aa) |
| | XM1_1604 | Conserved protein of unknown function（Cytidylate kinase-like family,31-201） Homologs of previously reported genes of unknown function. (235 aa) |
| | XM1_1639 | Protein of unknown function(ATPase, AAA-type, core,38-151); No homology to any previously reported sequences. (217 aa) |
| | XM1_1659 | Putative ATPase(Domain of unknown function DUF87,16-120); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (520 aa) |
| | XM1_1663 | ABC-type protease/lipase transport system, ATPase and permease component protein; Function of strongly homologous gene; transporter. (608 aa) |
| | XM1_1671 | Putative Rad3-related DNA helicase(ATP-dependent helicase, C-terminal,743-881); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (918 aa) |
| | livF | Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (274 aa) |
| | XM1_1687 | Branched-chain amino acid transport system ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (265 aa) |
| | XM1_1734 | Conserved protein of unknown function(AAA+ ATPase domain,194-344); Homologs of previously reported genes of unknown function. (412 aa) |
| | XM1_1756 | Putative Helicase(SNF2-related,6-226)1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (436 aa) |
| | uup | ABC transport system ATP-binding/permease protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (604 aa) |
| | yjjK | Energy-dependent translational throttle protein EttA; Function of strongly homologous gene; transporter. (559 aa) |
| | gltL | Glutamate/aspartate transport protein (ABC superfamily, atp_bind) (ABC transporter-like,41-165); Function of homologous gene experimentally demonstrated in an other organism; transporter. (242 aa) |
| | XM1_1839 | Putative ABC-type multidrug transport system, ATPase component (ABC transporter-lik,53-173); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (330 aa) |
| | cobB-3 | Cobyrinic acid A,C-diamide synthase（Cobyrinic acid a,c-diamide synthase CbiA,10-456） Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. (465 aa) |
| | hrpB | ATP-dependent helicase HrpB; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (831 aa) |
| | XM1_1929 | Putative protein parA (CobQ/CobB/MinD/ParA nucleotide binding domain,6-168); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (214 aa) |
| | XM1_1949 | NitT/TauT family transport system ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (452 aa) |
| | der | GTPase involved in ribosome synthesis and maintenance(GTP-binding protein EngA,4-449); GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (460 aa) |
| | pstB-3 | Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (259 aa) |
| | rhlE | ATP-dependent RNA helicase RhlE; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DEAD box helicase family. (567 aa) |
| | XM1_2049 | Superfamily I DNA/RNA helicase; Function of strongly homologous gene; enzyme. (637 aa) |
| | rhlE-2 | RNA helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DEAD box helicase family. (483 aa) |
| | XM1_2068 | Hypothetical protein; Homologs of previously reported genes of unknown function. (750 aa) |
| | tufB | Protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (396 aa) |
| | fusA | Protein chain elongation factor EF-G, GTP-binding; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase f [...] (694 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (217 aa) |
| | nosF | ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; enzyme. (281 aa) |
| | XM1_2187 | Putative Chromosome partitioning ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (344 aa) |
| | XM1_2192 | Putative ABC-type polar amino acid transport system, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (249 aa) |
| | XM1_2223 | Putative Terminase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (546 aa) |
| | arsA | Putative Arsenical pump-driving ATPase; Anion-transporting ATPase; Belongs to the arsA ATPase family. (579 aa) |
| | XM1_2305 | Putative ATP-dependent Zn protease (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the AAA ATPase family. (298 aa) |
| | feoB | Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (704 aa) |
| | XM1_2457 | Putative Adenylyl-sulfate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the APS kinase family. (167 aa) |
| | XM1_2458 | Protein of unknown function; No homology to any previously reported sequences. (435 aa) |
| | XM1_2520 | Putative ATP-binding cassette subfamily C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (1317 aa) |
| | XM1_2527 | Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (552 aa) |
| | XM1_2614 | Putative Prophage LambdaW4, terminase large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (662 aa) |
| | XM1_2620 | Putative Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (488 aa) |
| | XM1_2649 | Putative ATPase (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (2095 aa) |
| | XM1_2668 | Conserved protein of unknown function (putative ATPase involved in chromosome partitioning); Homologs of previously reported genes of unknown function. (363 aa) |
| | XM1_2716 | Putative Helicase domain protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (450 aa) |
| | cysA | Sulfate/thiosulfate ABC transporter; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (347 aa) |
| | livF-2 | Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (235 aa) |
| | braF | Putative High-affinity branched-chain amino acid transport ATP-binding protein BraF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (245 aa) |
| | braF-2 | Putative leucine/isoleucine/valine transporter subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (254 aa) |
| | XM1_2791 | Putative leucine/isoleucine/valine transporter subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (237 aa) |
| | XM1_2809 | Putative Helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (954 aa) |
| | XM1_2812 | Putative Type III restriction enzyme, res subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (912 aa) |
| | XM1_2821 | Protein of unknown function; No homology to any previously reported sequences. (509 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (460 aa) |
| | XM1_2854 | ATP-binding component of ABC superfamily; Function of strongly homologous gene; transporter. (257 aa) |
| | dnaB-2 | Replicative DNA helicase dnaB; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (505 aa) |
| | XM1_2909 | Putative serine protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (648 aa) |
| | XM1_3012 | Protein of unknown function; No homology to any previously reported sequences. (1470 aa) |
| | XM1_3023 | AAA domain-containing protein; Homologs of previously reported genes of unknown function. (305 aa) |
| | cysC | Adenylylsulphate kinase; Catalyzes the synthesis of activated sulfate. (641 aa) |
| | XM1_3052 | Putative ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (635 aa) |
| | era | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. (303 aa) |
| | hoxA | Hydrogenase transcriptional regulatory protein HoxA; Function of strongly homologous gene; regulator. (479 aa) |
| | ntrC | Nitrogen assimilation regulatory protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (484 aa) |
| | ntrX | Nitrogen assimilation regulatory protein NtrX; Function of strongly homologous gene; regulator. (463 aa) |
| | hflX | Putative GTPase; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. (435 aa) |
| | recG | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (693 aa) |
| | mfd | Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1159 aa) |
| | XM1_3173 | PPK2 domain-containing protein; Homologs of previously reported genes of unknown function. (332 aa) |
| | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (947 aa) |
| | XM1_3204 | DNA polymerase III, delta prime subunit; Function of strongly homologous gene; enzyme. (363 aa) |
| | tmk | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. (212 aa) |
| | livF-3 | Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (234 aa) |
| | livG | Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (243 aa) |
| | XM1_3260 | Putative ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (724 aa) |
| | XM1_3261 | Putative ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (592 aa) |
| | XM1_3277 | Putative ATPase family protein_; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (284 aa) |
| | lolD | Outer membrane-specific lipoprotein transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (234 aa) |
| | livG-2 | ABC-type branched-chain amino acid transport systems, ATPase component; Function of strongly homologous gene; transporter. (261 aa) |
| | livF-4 | Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (246 aa) |
| | znuC | Zinc transporter subunit: ATP-binding component of ABC superfamily; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. (263 aa) |
| | XM1_3347 | Putative GTPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (348 aa) |
| | lolD-2 | Outer membrane-specific lipoprotein transporter subunit; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (226 aa) |
| | XM1_3415 | Putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (238 aa) |
| | livF-5 | Branched-chain amino acid transport system ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter. (242 aa) |
| | potG | Putrescine transporter subunit: ATP-binding component of ABC superfamily; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (379 aa) |
| | prkB | Phosphoribulokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (297 aa) |
| | feoB-2 | Fused ferrous iron transporter, protein B: GTP-binding protein; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (776 aa) |
| | XM1_3550 | Uncharacterized protein; Homologs of previously reported genes of unknown function. (724 aa) |
| | bioD | ATP-dependent dethiobiotin synthetase BioD; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. (205 aa) |
| | XM1_3575 | Putative transporter subunit: ATP-binding component of ABC superfamily transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (225 aa) |
| | mobB-2 | Molybdopterin-guanine dinucleotide biosynthesis protein B; Function of strongly homologous gene; enzyme. (163 aa) |
| | pyrG | CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (541 aa) |
| | livG-3 | Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (298 aa) |
| | livF-6 | Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (237 aa) |
| | lon | DNA-binding ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (803 aa) |
| | clpX | ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (421 aa) |
| | XM1_3700 | Chromosomal replication initiator, DnaA; Function of homologous gene experimentally demonstrated in an other organism; cell process. (231 aa) |
| | XM1_3781 | Putative ATP-dependent endonuclease of the OLD family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (599 aa) |
| | XM1_3782 | AAA domain-containing protein; No homology to any previously reported sequences. (761 aa) |
| | XM1_3789 | Putative ATPase domain (N-terminal fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the AAA ATPase family. (675 aa) |
| | XM1_3798 | Conserved protein of unknown function(containing coiled-coil domain133-161; No homology to any previously reported sequences. (614 aa) |
| | feoB-3 | Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (704 aa) |
| | XM1_3813 | Putative ABC transporter, ATPase components; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (540 aa) |
| | livF-7 | Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (238 aa) |
| | livG-4 | Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (253 aa) |
| | glnG | Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD; Function of strongly homologous gene; regulator. (446 aa) |
| | hypB | GTP hydrolase involved in nickel liganding into hydrogenases; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (315 aa) |
| | nifH | Nitrogenase iron protein, nifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (295 aa) |
| | clpB | Protein disaggregation chaperone; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (863 aa) |
| | XM1_3973 | Putative periplasmic protein kinase ArgK; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (314 aa) |
| | XM1_3979 | APH domain-containing protein; Homologs of previously reported genes of unknown function. (520 aa) |
| | XM1_3991 | ABC-type antimicrobial peptide transport system, ATPase component; Function of strongly homologous gene; transporter. (225 aa) |
| | XM1_3997 | Putative serine/threonine kinase with signal transduction histidinekinase and gaf sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1952 aa) |
| | norQ | NorQ protein required for nitric oxide reductase (Nor) activity; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (260 aa) |
| | XM1_4043 | Putative phage DNA transposition protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. (245 aa) |
| | XM1_4071 | Putative Mu-like prophage FluMu protein gp28; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. (545 aa) |
| | purA | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (429 aa) |
| | ftsH | Protease, ATP-dependent zinc-metallo （Cell division protein FtsH） Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (638 aa) |
| | ruvB | ATP-dependent DNA helicase, component of RuvABC resolvasome; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (347 aa) |
| | XM1_4165 | Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (556 aa) |
| | XM1_4262 | Putative ABC transporter family ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (613 aa) |
| | modC | Molybdate transporter subunit modC (ATP-binding component of ABC superfamily); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family. (363 aa) |
| | nifA | Mo/Fe nitrogenase specific transcriptional regulator, NifA; Function of strongly homologous gene; regulator. (558 aa) |
| | rarA | Replication-associated recombination protein A; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (429 aa) |
| | XM1_4363 | Putative iron-sulfur protein NUBPL (Protein mrp homolog); Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (372 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (324 aa) |
| | YheS | Uncharacterized ABC transporter ATP-binding protein YheS; Function of strongly homologous gene; putative enzyme. (626 aa) |
| | XM1_4470 | Putative ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (247 aa) |
| | gmk | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. (215 aa) |
| | XM1_4538 | Protein of unknown function; No homology to any previously reported sequences. (122 aa) |
| | imuA | Damage-inducible mutagenesis protein (ImuA-like); Function of strongly homologous gene; enzyme. (251 aa) |
| | XM1_4593 | Homologs of previously reported genes of unknown function. (1222 aa) |
| | uvrD | DNA-dependent ATPase I and helicase II; Function of strongly homologous gene; enzyme. (760 aa) |
| | fusA-2 | Elongation factor G-like protein; Function of strongly homologous gene; factor. (675 aa) |
| | XM1_4745 | Putative type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1001 aa) |
| | fliI | Flagellum-specific ATP synthase; Function of strongly homologous gene; structure. (450 aa) |
