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polA polA XM1_0087 XM1_0087 XM1_0082 XM1_0082 XM1_0034 XM1_0034 XM1_0017 XM1_0017 XM1_2429 XM1_2429 XM1_2460 XM1_2460 XM1_2470 XM1_2470 XM1_2473 XM1_2473 XM1_2474 XM1_2474 XM1_3024 XM1_3024 rnd rnd XM1_3964 XM1_3964 XM1_4042 XM1_4042 ruvC ruvC rnhA rnhA XM1_4743 XM1_4743 XM1_0447 XM1_0447 dnaQ dnaQ XM1_0890 XM1_0890 XM1_1083 XM1_1083 rnhB rnhB XM1_1423 XM1_1423 XM1_2392 XM1_2392 XM1_2418 XM1_2418
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (925 aa)
XM1_0087Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (201 aa)
XM1_0082Conserved protein of unknown function（contain Ribonuclease H-like domain） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (180 aa)
XM1_0034Protein of unknown function (putative plasmid stability protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (201 aa)
XM1_0017Putative ISRSO14-transposase orfB protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (304 aa)
XM1_2429Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (191 aa)
XM1_2460Putative Integrase, catalytic region (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (125 aa)
XM1_2470Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (164 aa)
XM1_2473Putative transposase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (132 aa)
XM1_2474Conserved protein of unknown function (putative partial transposase of ISMex1, IS3 family (ORF 2)); Homologs of previously reported genes of unknown function. (150 aa)
XM1_3024Transposase; Function of strongly homologous gene; enzyme. (692 aa)
rndRibonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. (421 aa)
XM1_3964DNA polymerase III; Function of strongly homologous gene; enzyme. (676 aa)
XM1_4042Putative transposase (Bacteriophage Mu, transposase 25-230; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. (476 aa)
ruvCCrossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC); Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (166 aa)
rnhARibonuclease HI, degrades RNA of DNA-RNA hybrids; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (156 aa)
XM1_4743Putative DNA polymerase III, epsilon subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (215 aa)
XM1_0447Type I restriction enzyme R Protein; Subunit R is required for both nuclease and ATPase activities, but not for modification. (789 aa)
dnaQDNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (230 aa)
XM1_0890Conserved protein of unknown function （contain Ribonuclease H-like domain） Homologs of previously reported genes of unknown function. (185 aa)
XM1_1083Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (318 aa)
rnhBRibonuclease HII, degrades RNA of DNA-RNA hybrids (Ribonuclease H-like domain; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (204 aa)
XM1_1423Putative Ribonuclease D(Ribonuclease H-like domain,8-191); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (203 aa)
XM1_2392Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (201 aa)
XM1_2418Putative transposase of ISAli3, IS630 family. ORFB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (180 aa)
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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