(4 nodes) Ferritin-like domain network (Magnetospirillum sp. XM1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bfr	Bacterioferritin, iron storage and detoxification protein(Bacterioferritin,1-156); Iron-storage protein. (160 aa)
	bfr-4	Bacterioferritin, iron storage and detoxification protein; Iron-storage protein. (163 aa)
	bfr-3	Bacterioferritin, iron storage and detoxification protein; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the bacterioferritin family. (160 aa)
	bfr-2	Bacterioferritin, iron storage and detoxification protein(Ferritin-related,1-155); Iron-storage protein. (163 aa)

Your Current Organism:

Magnetospirillum sp. XM1

NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bfr	bfr-2	XM1_1652	XM1_1653	Bacterioferritin, iron storage and detoxification protein(Bacterioferritin,1-156); Iron-storage protein.	Bacterioferritin, iron storage and detoxification protein(Ferritin-related,1-155); Iron-storage protein.	0.806
bfr-2	bfr	XM1_1653	XM1_1652	Bacterioferritin, iron storage and detoxification protein(Ferritin-related,1-155); Iron-storage protein.	Bacterioferritin, iron storage and detoxification protein(Bacterioferritin,1-156); Iron-storage protein.	0.806
bfr-3	bfr-4	XM1_3902	XM1_3903	Bacterioferritin, iron storage and detoxification protein; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the bacterioferritin family.	Bacterioferritin, iron storage and detoxification protein; Iron-storage protein.	0.802
bfr-4	bfr-3	XM1_3903	XM1_3902	Bacterioferritin, iron storage and detoxification protein; Iron-storage protein.	Bacterioferritin, iron storage and detoxification protein; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the bacterioferritin family.	0.802