(5 nodes) Novobiocin biosynthesis, and Aromatic amino acid family biosynthetic process, prephenate pathway network (Pedobacter sp. BMA)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KLT67126.1	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
	KLT66122.1	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
	KLT65356.1	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	KLT65364.1	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	KLT64861.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)

Your Current Organism:

Pedobacter sp. BMA

NCBI taxonomy Id: 1663685
Other names: P. sp. BMA

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KLT64861.1	KLT65356.1	AB669_14105	AB669_09680	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
KLT64861.1	KLT65364.1	AB669_14105	AB669_09725	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
KLT64861.1	KLT66122.1	AB669_14105	AB669_08125	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KLT64861.1	KLT67126.1	AB669_14105	AB669_02665	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KLT65356.1	KLT64861.1	AB669_09680	AB669_14105	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
KLT65356.1	KLT65364.1	AB669_09680	AB669_09725	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KLT65356.1	KLT66122.1	AB669_09680	AB669_08125	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
KLT65356.1	KLT67126.1	AB669_09680	AB669_02665	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
KLT65364.1	KLT64861.1	AB669_09725	AB669_14105	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
KLT65364.1	KLT65356.1	AB669_09725	AB669_09680	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KLT65364.1	KLT66122.1	AB669_09725	AB669_08125	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KLT65364.1	KLT67126.1	AB669_09725	AB669_02665	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KLT66122.1	KLT64861.1	AB669_08125	AB669_14105	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KLT66122.1	KLT65356.1	AB669_08125	AB669_09680	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
KLT66122.1	KLT65364.1	AB669_08125	AB669_09725	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KLT66122.1	KLT67126.1	AB669_08125	AB669_02665	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KLT67126.1	KLT64861.1	AB669_02665	AB669_14105	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KLT67126.1	KLT65356.1	AB669_02665	AB669_09680	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
KLT67126.1	KLT65364.1	AB669_02665	AB669_09725	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KLT67126.1	KLT66122.1	AB669_02665	AB669_08125	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900