STRINGSTRING
AB675_4845 AB675_4845 AB675_10132 AB675_10132 AB675_11664 AB675_11664 AB675_1284 AB675_1284 AB675_8947 AB675_8947 AB675_8897 AB675_8897 AB675_4048 AB675_4048 AB675_3956 AB675_3956 AB675_3017 AB675_3017 AB675_4198 AB675_4198 AB675_4225 AB675_4225 AB675_5269 AB675_5269 AB675_5238 AB675_5238 AB675_3553 AB675_3553 AB675_7454 AB675_7454 AB675_5527 AB675_5527 AB675_9680 AB675_9680 AB675_8452 AB675_8452 AB675_2671 AB675_2671 AB675_2305 AB675_2305 AB675_4765 AB675_4765 AB675_1704 AB675_1704 AB675_3006 AB675_3006 AB675_3207 AB675_3207 AB675_3812 AB675_3812 AB675_9928 AB675_9928 AB675_1283 AB675_1283 AB675_5017 AB675_5017 AB675_10998 AB675_10998 AB675_1366 AB675_1366 AB675_10782 AB675_10782 AB675_3972 AB675_3972 AB675_8184 AB675_8184 AB675_3110 AB675_3110 AB675_9216 AB675_9216 AB675_5349 AB675_5349 AB675_9675 AB675_9675 AB675_152 AB675_152 AB675_2077 AB675_2077 AB675_3328 AB675_3328 AB675_6347 AB675_6347 AB675_2304 AB675_2304 AB675_2672 AB675_2672 AB675_280 AB675_280 AB675_476 AB675_476 AB675_10581 AB675_10581 AB675_415 AB675_415 AB675_963 AB675_963 AB675_2061 AB675_2061 AB675_2201 AB675_2201 AB675_2755 AB675_2755 AB675_1484 AB675_1484 AB675_3900 AB675_3900 AB675_3116 AB675_3116 AB675_10585 AB675_10585 AB675_5871 AB675_5871 AB675_9568 AB675_9568 AB675_2073 AB675_2073 AB675_6284 AB675_6284 AB675_7842 AB675_7842 AB675_8723 AB675_8723 AB675_4933 AB675_4933 AB675_11665 AB675_11665 AB675_2992 AB675_2992 AB675_10026 AB675_10026 AB675_4338 AB675_4338 AB675_3578 AB675_3578 AB675_1152 AB675_1152 AB675_2987 AB675_2987 AB675_5276 AB675_5276 AB675_4333 AB675_4333 AB675_3957 AB675_3957 AB675_8178 AB675_8178 AB675_7514 AB675_7514 AB675_7709 AB675_7709 AB675_12139 AB675_12139 AB675_6395 AB675_6395 AB675_9074 AB675_9074 AB675_6659 AB675_6659 AB675_7985 AB675_7985 AB675_9250 AB675_9250 AB675_9665 AB675_9665 AB675_8259 AB675_8259 AB675_8299 AB675_8299 AB675_886 AB675_886
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AB675_4845Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (667 aa)
AB675_10132ATP-dependent RNA helicase chl1. (831 aa)
AB675_11664DNA-directed RNA polymerase II subunit RPB2. (445 aa)
AB675_1284Transcription elongation factor spt6. (1188 aa)
AB675_8947RPOL4c domain-containing protein. (156 aa)
AB675_8897Uncharacterized protein. (299 aa)
AB675_4048Uncharacterized protein. (549 aa)
AB675_3956DNA-directed RNA polymerase II subunit RPB1. (304 aa)
AB675_3017DNA repair helicase RAD25. (838 aa)
AB675_4198DNA-directed RNA polymerase II subunit RPB3. (199 aa)
AB675_4225Uncharacterized protein. (420 aa)
AB675_5269DUF3591 domain-containing protein. (1218 aa)
AB675_5238BTB domain-containing protein. (876 aa)
AB675_3553Putative nitro HBN1. (310 aa)
AB675_7454DNA repair helicase rad15. (778 aa)
AB675_5527TAFII28 domain-containing protein. (361 aa)
AB675_9680CFEM domain-containing protein. (332 aa)
AB675_8452RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (493 aa)
AB675_2671BTP domain-containing protein. (258 aa)
AB675_2305DNA-directed RNA polymerase II subunit rpb7. (167 aa)
AB675_4765Transcription elongation factor S-II. (307 aa)
AB675_1704Uncharacterized protein. (324 aa)
AB675_3006Transcription initiation factor TFIID subunit 5. (741 aa)
AB675_3207Transcription elongation factor spt5. (1377 aa)
AB675_3812Uncharacterized protein. (667 aa)
AB675_9928DNA-directed RNA polymerase II subunit RPB11. (167 aa)
AB675_1283Transcription elongation factor spt6. (303 aa)
AB675_5017FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (504 aa)
AB675_10998RNA polymerase II transcription factor B subunit 4. (445 aa)
AB675_1366DUF4211 domain-containing protein. (609 aa)
AB675_10782Putative RNA polymerase II transcription factor B subunit 1. (452 aa)
AB675_3972Uncharacterized protein. (451 aa)
AB675_8184Uncharacterized protein. (551 aa)
AB675_3110Positive regulator of purine utilization. (694 aa)
AB675_9216Uncharacterized protein. (572 aa)
AB675_5349Uncharacterized protein. (343 aa)
AB675_9675Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (123 aa)
AB675_152Putative FCP1 homology domain-containing protein. (625 aa)
AB675_2077Uncharacterized protein. (756 aa)
AB675_3328Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1064 aa)
AB675_6347Transcription initiation factor TFIID subunit 12. (558 aa)
AB675_2304Uncharacterized protein. (519 aa)
AB675_2672Transcription initiation factor TFIID subunit 7. (701 aa)
AB675_280RNA polymerase II transcription factor B subunit 3. (270 aa)
AB675_476Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily. (415 aa)
AB675_10581CFEM domain-containing protein. (440 aa)
AB675_415DNA excision repair protein ckn1. (342 aa)
AB675_963Uncharacterized protein. (291 aa)
AB675_2061DNA-directed RNA polymerases I, II, and III subunit RPABC5. (79 aa)
AB675_2201Vegetative incompatibility protein HET-E-1. (474 aa)
AB675_2755Acyl_transf_3 domain-containing protein. (510 aa)
AB675_1484Putative nitro HBN1. (196 aa)
AB675_3900Uncharacterized protein. (244 aa)
AB675_3116Putative nitro HBN1. (210 aa)
AB675_10585Transcription initiation factor IIE subunit beta. (223 aa)
AB675_5871Uncharacterized protein. (465 aa)
AB675_9568RTR1-type domain-containing protein. (241 aa)
AB675_2073Putative nitro HBN1. (209 aa)
AB675_6284Cell division control protein 73. (421 aa)
AB675_7842Transcription initiation factor IIA large subunit. (355 aa)
AB675_8723Uncharacterized protein. (274 aa)
AB675_4933Transcription initiation factor IIF subunit beta. (383 aa)
AB675_11665DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family. (724 aa)
AB675_2992Uncharacterized protein. (230 aa)
AB675_10026Transcription initiation factor TFIID subunit 6. (505 aa)
AB675_4338DNA repair protein rhp26. (1207 aa)
AB675_3578Uncharacterized protein. (2099 aa)
AB675_1152Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (114 aa)
AB675_2987Transcription factor iws1. (400 aa)
AB675_5276Transcription initiation factor IIE subunit alpha. (492 aa)
AB675_4333Transcription initiation factor TFIID subunit 2. (1576 aa)
AB675_3957DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1431 aa)
AB675_8178RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (589 aa)
AB675_7514Transcription initiation factor IIB. (372 aa)
AB675_7709RNA polymerase-associated protein. (606 aa)
AB675_12139Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (232 aa)
AB675_6395FACT complex subunit spt16. (1024 aa)
AB675_9074Cyclin CCL1; Belongs to the cyclin family. (401 aa)
AB675_6659Cyclin-dependent kinase 20. (376 aa)
AB675_7985Uncharacterized protein. (294 aa)
AB675_9250Uncharacterized protein. (258 aa)
AB675_9665Tetratricopeptide repeat protein 1. (1223 aa)
AB675_8259Uncharacterized protein. (294 aa)
AB675_8299TAF8_C domain-containing protein. (334 aa)
AB675_886DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
Your Current Organism:
Phialophora attae
NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014
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