5 items (Phialophora attae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AB675_2047	F-box domain-containing protein. (479 aa)
	AB675_2375	Uncharacterized protein. (619 aa)
	AB675_2527	Uncharacterized protein. (657 aa)
	AB675_11715	Clock-controlled protein 8. (475 aa)
	AB675_3696	Uncharacterized protein. (599 aa)

Your Current Organism:

Phialophora attae

NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AB675_11715	AB675_2047	A0A0N1GY13	A0A0N0NPF5	Clock-controlled protein 8.	F-box domain-containing protein.	0.437
AB675_11715	AB675_2375	A0A0N1GY13	A0A0N0NRK0	Clock-controlled protein 8.	Uncharacterized protein.	0.437
AB675_11715	AB675_2527	A0A0N1GY13	A0A0N0NRM9	Clock-controlled protein 8.	Uncharacterized protein.	0.593
AB675_11715	AB675_3696	A0A0N1GY13	A0A0N1NYI6	Clock-controlled protein 8.	Uncharacterized protein.	0.593
AB675_2047	AB675_11715	A0A0N0NPF5	A0A0N1GY13	F-box domain-containing protein.	Clock-controlled protein 8.	0.437
AB675_2047	AB675_2527	A0A0N0NPF5	A0A0N0NRM9	F-box domain-containing protein.	Uncharacterized protein.	0.706
AB675_2047	AB675_3696	A0A0N0NPF5	A0A0N1NYI6	F-box domain-containing protein.	Uncharacterized protein.	0.706
AB675_2375	AB675_11715	A0A0N0NRK0	A0A0N1GY13	Uncharacterized protein.	Clock-controlled protein 8.	0.437
AB675_2375	AB675_2527	A0A0N0NRK0	A0A0N0NRM9	Uncharacterized protein.	Uncharacterized protein.	0.706
AB675_2375	AB675_3696	A0A0N0NRK0	A0A0N1NYI6	Uncharacterized protein.	Uncharacterized protein.	0.706
AB675_2527	AB675_11715	A0A0N0NRM9	A0A0N1GY13	Uncharacterized protein.	Clock-controlled protein 8.	0.593
AB675_2527	AB675_2047	A0A0N0NRM9	A0A0N0NPF5	Uncharacterized protein.	F-box domain-containing protein.	0.706
AB675_2527	AB675_2375	A0A0N0NRM9	A0A0N0NRK0	Uncharacterized protein.	Uncharacterized protein.	0.706
AB675_3696	AB675_11715	A0A0N1NYI6	A0A0N1GY13	Uncharacterized protein.	Clock-controlled protein 8.	0.593
AB675_3696	AB675_2047	A0A0N1NYI6	A0A0N0NPF5	Uncharacterized protein.	F-box domain-containing protein.	0.706
AB675_3696	AB675_2375	A0A0N1NYI6	A0A0N0NRK0	Uncharacterized protein.	Uncharacterized protein.	0.706