STRINGSTRING
AB675_7426 AB675_7426 AB675_10221 AB675_10221 AB675_9446 AB675_9446 AB675_4067 AB675_4067 AB675_7189 AB675_7189 AB675_11694 AB675_11694 AB675_4746 AB675_4746 AB675_10418 AB675_10418 AB675_8895 AB675_8895 AB675_9999 AB675_9999 AB675_3667 AB675_3667 AB675_1589 AB675_1589 AB675_1477 AB675_1477 AB675_10288 AB675_10288 AB675_3220 AB675_3220 AB675_3931 AB675_3931 AB675_12173 AB675_12173 AB675_1167 AB675_1167 AB675_12142 AB675_12142 AB675_4102 AB675_4102 AB675_4518 AB675_4518 AB675_4562 AB675_4562 AB675_4956 AB675_4956 AB675_5041 AB675_5041 AB675_11520 AB675_11520 AB675_11491 AB675_11491 AB675_11256 AB675_11256 AB675_11277 AB675_11277 AB675_7732 AB675_7732 AB675_7688 AB675_7688 AB675_10679 AB675_10679 AB675_7946 AB675_7946 AB675_8166 AB675_8166 AB675_9233 AB675_9233 AB675_9327 AB675_9327 AB675_9562 AB675_9562 AB675_9858 AB675_9858 AB675_1745 AB675_1745 AB675_6910 AB675_6910 AB675_6716 AB675_6716 AB675_6264 AB675_6264 AB675_6313 AB675_6313 AB675_6383 AB675_6383 AB675_8786 AB675_8786 AB675_8342 AB675_8342 AB675_8626 AB675_8626 AB675_8806 AB675_8806 AB675_2599 AB675_2599 TIF6 TIF6 AB675_521 AB675_521 AB675_689 AB675_689 AB675_236 AB675_236 AB675_627 AB675_627 AB675_8978 AB675_8978 AB675_10995 AB675_10995 AB675_11133 AB675_11133 AB675_8886 AB675_8886 AB675_10231 AB675_10231 AB675_151 AB675_151 AB675_8979 AB675_8979 AB675_4855 AB675_4855 AB675_3820 AB675_3820 AB675_4245 AB675_4245 AB675_1322 AB675_1322 AB675_1400 AB675_1400 AB675_4114 AB675_4114 AB675_4857 AB675_4857 AB675_9447 AB675_9447 AB675_3355 AB675_3355 AB675_11503 AB675_11503 AB675_4792 AB675_4792 AB675_7802 AB675_7802 AB675_11880 AB675_11880 AB675_9114 AB675_9114 AB675_12064 AB675_12064 SPB1 SPB1 AB675_12126 AB675_12126 AB675_5595 AB675_5595 AB675_9671 AB675_9671 AB675_4235 AB675_4235 AB675_3199 AB675_3199 AB675_2016 AB675_2016 AB675_2059 AB675_2059 AB675_11995 AB675_11995 AB675_11325 AB675_11325 AB675_4229 AB675_4229 AB675_6457 AB675_6457 AB675_8681 AB675_8681 AB675_8321 AB675_8321 AB675_10590 AB675_10590 AB675_10764 AB675_10764 AB675_11609 AB675_11609 AB675_11483 AB675_11483 AB675_616 AB675_616 YTM1 YTM1 AB675_9333 AB675_9333 AB675_9672 AB675_9672 AB675_5664 AB675_5664 AB675_2229 AB675_2229 AB675_2041 AB675_2041 AB675_2070 AB675_2070 AB675_6738 AB675_6738 AB675_6937 AB675_6937 AB675_6504 AB675_6504 AB675_6656 AB675_6656 AB675_6327 AB675_6327 AB675_6493 AB675_6493 AB675_8695 AB675_8695 AB675_8566 AB675_8566 AB675_385 AB675_385 AB675_2720 AB675_2720 AB675_3790 AB675_3790 AB675_9923 AB675_9923 AB675_11108 AB675_11108 NAT10 NAT10 AB675_11735 AB675_11735 AB675_10104 AB675_10104 AB675_11875 AB675_11875 AB675_3245 AB675_3245 AB675_11554 AB675_11554 AB675_7844 AB675_7844 AB675_4520 AB675_4520 AB675_3315 AB675_3315 AB675_11488 AB675_11488 AB675_2066 AB675_2066 AB675_6870 AB675_6870 AB675_6319 AB675_6319 AB675_9368 AB675_9368 AB675_5435 AB675_5435 AB675_2465 AB675_2465 AB675_6213 AB675_6213 AB675_8280 AB675_8280 AB675_569 AB675_569 AB675_7190 AB675_7190 AB675_7386 AB675_7386 AB675_4885 AB675_4885 AB675_9940 AB675_9940 AB675_3225 AB675_3225 AB675_5226 AB675_5226 AB675_4664 AB675_4664 AB675_8973 AB675_8973 AB675_5800 AB675_5800 AB675_12040 AB675_12040 AB675_4553 AB675_4553 AB675_5857 AB675_5857 AB675_8918 AB675_8918 AB675_4221 AB675_4221 ERB1 ERB1 AB675_9725 AB675_9725 AB675_9240 AB675_9240 AB675_9367 AB675_9367 AB675_9730 AB675_9730 AB675_9678 AB675_9678 AB675_4505 AB675_4505 AB675_2101 AB675_2101 AB675_2060 AB675_2060 AB675_7772 AB675_7772 AB675_9087 AB675_9087 AB675_7602 AB675_7602 AB675_5342 AB675_5342 AB675_6269 AB675_6269 AB675_7908 AB675_7908 NOP7 NOP7 AB675_5652 AB675_5652 AB675_549 AB675_549 AB675_832 AB675_832 AB675_500 AB675_500 AB675_1880 AB675_1880 AB675_496 AB675_496 TRM8 TRM8 AB675_599 AB675_599 AB675_298 AB675_298
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AB675_7426ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (407 aa)
AB675_10221Protein sof1. (398 aa)
AB675_9446Bms1-type G domain-containing protein. (761 aa)
AB675_4067Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (560 aa)
AB675_718960S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
AB675_11694Ribosomal RNA-processing protein 15. (275 aa)
AB675_4746Putative nucleolar complex protein 14. (891 aa)
AB675_10418Sas10 domain-containing protein. (605 aa)
AB675_8895Brix domain-containing protein. (392 aa)
AB675_9999Ribosome biogenesis protein brx1. (336 aa)
AB675_3667Ribosomal RNA-processing protein 7. (299 aa)
AB675_1589Multisite-specific tRNA:(Cytosine-C(5))-methyltransferase trm4a; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (866 aa)
AB675_1477RNA-binding protein rnp24. (354 aa)
AB675_10288Nucleolar protein 9. (680 aa)
AB675_322025S rRNA (Cytosine-C(5))-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (785 aa)
AB675_3931Exosome complex component SKI6. (260 aa)
AB675_12173RNA helicase. (855 aa)
AB675_1167Ribosome assembly protein rrb1. (509 aa)
AB675_12142rRNA-processing protein EBP2. (419 aa)
AB675_4102rRNA-processing protein utp23. (318 aa)
AB675_4518rRNA biogenesis protein rrp5. (1771 aa)
AB675_456260S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (511 aa)
AB675_4956Protein bfr2. (525 aa)
AB675_5041Ribosome biogenesis protein ENP2. (750 aa)
AB675_11520tRNA pseudouridine synthase 1. (571 aa)
AB675_11491Putative ATP-dependent RNA helicase prh1. (883 aa)
AB675_11256ATP-dependent RNA helicase mak5; Belongs to the DEAD box helicase family. (748 aa)
AB675_11277ATP-dependent RNA helicase dbp3; Belongs to the DEAD box helicase family. (502 aa)
AB675_7732Suppressor of glycerol defect protein 1. (881 aa)
AB675_7688Ribosomal protein arginine N-methyltransferase rmt3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (595 aa)
AB675_10679U3 small nucleolar RNA-associated protein 5. (862 aa)
AB675_7946ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family. (500 aa)
AB675_816625S rRNA (Cytosine-C(5))-methyltransferase rcm1; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (525 aa)
AB675_9233Pre-rRNA-processing protein ipi1. (333 aa)
AB675_9327Protein MAK16; Belongs to the MAK16 family. (312 aa)
AB675_9562Putative RNA 3'-terminal phosphate cyclase-like protein. (406 aa)
AB675_9858Ribosome production factor 1. (426 aa)
AB675_1745U3 small nucleolar RNA-associated protein 15. (533 aa)
AB675_6910Putative ribosome biogenesis protein C8F11.04. (382 aa)
AB675_6716Exosome complex component RRP46. (238 aa)
AB675_6264Nuclear nucleic acid-binding protein C1D. (267 aa)
AB675_6313rRNA 2'-O-methyltransferase fibrillarin. (254 aa)
AB675_6383Nucleolar protein 56. (528 aa)
AB675_8786U3 small nucleolar RNA-associated protein 6. (383 aa)
AB675_8342Putative helicase. (1566 aa)
AB675_8626RNA helicase. (606 aa)
AB675_8806RRM domain-containing protein. (339 aa)
AB675_2599Nucleolar protein 12. (503 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (256 aa)
AB675_521Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (222 aa)
AB675_689Pre-rRNA-processing protein PNO1. (269 aa)
AB675_236Uncharacterized protein. (193 aa)
AB675_627U3 small nucleolar RNA-associated protein 4. (904 aa)
AB675_8978RNA 3'-terminal phosphate cyclase. (453 aa)
AB675_10995tRNA (Uracil(54)-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (592 aa)
AB675_11133Pumilio homology domain family member 6. (649 aa)
AB675_8886rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family. (123 aa)
AB675_10231KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (336 aa)
AB675_151rRNA biogenesis protein rrp36. (320 aa)
AB675_8979Putative RNA-binding protein. (481 aa)
AB675_4855Ribosome biogenesis protein nsa2. (261 aa)
AB675_3820Exosome complex component rrp4. (342 aa)
AB675_4245Ribosomal RNA-processing protein 12. (1307 aa)
AB675_1322CBF domain-containing protein. (980 aa)
AB675_1400ATP-dependent RNA helicase mitochondrial; Belongs to the DEAD box helicase family. (559 aa)
AB675_4114Putative WD repeat-containing protein. (555 aa)
AB675_4857Putative ATP-dependent RNA helicase. (1258 aa)
AB675_9447Putative U3 small nucleolar RNA-associated protein 7. (567 aa)
AB675_3355Protein pxr1. (353 aa)
AB675_11503Uncharacterized protein. (380 aa)
AB675_4792U3 small nucleolar ribonucleoprotein imp3. (188 aa)
AB675_7802RNA helicase. (629 aa)
AB675_11880Casein kinase-like protein; Belongs to the protein kinase superfamily. (323 aa)
AB675_9114RNase_PH domain-containing protein. (393 aa)
AB675_12064Serine/threonine-protein kinase rio2. (429 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (827 aa)
AB675_12126ATP-dependent RNA helicase DBP10. (910 aa)
AB675_559520S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (436 aa)
AB675_9671Protein LTV1. (483 aa)
AB675_4235Ribosome assembly factor mrt4. (203 aa)
AB675_3199Uncharacterized protein. (363 aa)
AB675_2016Multiple RNA-binding domain-containing protein 1. (768 aa)
AB675_2059Nucleolar complex protein 2. (588 aa)
AB675_11995Exosome complex component MTR3. (317 aa)
AB675_11325Putative U3 small nucleolar RNA-associated protein 18. (606 aa)
AB675_4229Exosome complex component CSL4. (203 aa)
AB675_6457Uncharacterized protein. (287 aa)
AB675_8681Protein kri1. (593 aa)
AB675_8321Ribosome biogenesis protein SSF1. (482 aa)
AB675_10590RNase_PH domain-containing protein. (423 aa)
AB675_10764Nucleolar protein 16. (233 aa)
AB675_11609U3 small nucleolar RNA-associated protein 20. (2527 aa)
AB675_11483Exosome complex component rrp45. (297 aa)
AB675_616Ribosome assembly protein 4. (630 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (462 aa)
AB675_9333Uncharacterized protein. (303 aa)
AB675_9672Large subunit GTPase 1. (641 aa)
AB675_5664tRNA (Guanine(10)-N2)-methyltransferase. (611 aa)
AB675_2229ATP-dependent RNA helicase DRS1. (822 aa)
AB675_2041Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (679 aa)
AB675_2070ATP-dependent RNA helicase ROK1. (622 aa)
AB675_6738Ribosome biogenesis protein bms1. (1165 aa)
AB675_6937tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit trm82. (677 aa)
AB675_6504DNA polymerase V. (997 aa)
AB675_6656CBF domain-containing protein. (271 aa)
AB675_6327Cytoplasmic 60S subunit biogenesis factor REI1. (309 aa)
AB675_6493U3 small nucleolar RNA-associated-like protein. (1025 aa)
AB675_8695U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (717 aa)
AB675_8566Superkiller protein 3. (1422 aa)
AB675_385Uncharacterized protein. (272 aa)
AB675_2720Putative WD repeat-containing protein. (944 aa)
AB675_3790Ribosomal RNA-processing protein 14. (534 aa)
AB675_9923Williams-Beuren syndrome chromosomal region 27 protein. (247 aa)
AB675_11108Uncharacterized protein; Belongs to the DEAD box helicase family. (706 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1099 aa)
AB675_11735Virulence protein SSD1. (1333 aa)
AB675_10104U3 small nucleolar ribonucleoprotein IMP4. (293 aa)
AB675_11875Pre-rRNA-processing protein crb3/ipi3. (533 aa)
AB675_3245Uncharacterized protein. (222 aa)
AB675_11554Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4628 aa)
AB675_7844tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs. (741 aa)
AB675_4520RNA exonuclease 4. (391 aa)
AB675_331540S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (251 aa)
AB675_11488Arginine N-methyltransferase 2; S-adenosyl-L-methionine-dependent protein-arginine N- methyltransferase that methylates the delta-nitrogen atom of arginine residues to form N5-methylarginine (type IV) in target proteins. Monomethylates ribosomal protein L12. (412 aa)
AB675_2066U3 small nucleolar RNA-associated protein 17. (1078 aa)
AB675_6870Uncharacterized protein. (667 aa)
AB675_6319Putative methyltransferase NSUN3; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (309 aa)
AB675_936860S ribosomal subunit assembly/export protein LOC1. (201 aa)
AB675_5435Periodic tryptophan-like protein. (902 aa)
AB675_246528 kDa ribonucleoprotein, chloroplastic. (516 aa)
AB675_6213Exosome complex component RRP40. (287 aa)
AB675_8280Uncharacterized protein. (373 aa)
AB675_569rRNA-processing protein FCF1. (194 aa)
AB675_7190Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (671 aa)
AB675_7386Pre-rRNA-processing protein esf1. (709 aa)
AB675_4885SRP40_C domain-containing protein. (174 aa)
AB675_9940Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (575 aa)
AB675_3225U3 small nucleolar RNA-associated protein 22. (1086 aa)
AB675_5226ATP-dependent RNA helicase dbp9. (607 aa)
AB675_4664U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (267 aa)
AB675_8973Ribosomal RNA small subunit methyltransferase NEP1. (256 aa)
AB675_5800Zinc finger protein bud20. (105 aa)
AB675_12040Putative ATP-dependent RNA helicase ucp12. (1375 aa)
AB675_4553Pre-rRNA-processing protein esf2. (424 aa)
AB675_5857tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]. (703 aa)
AB675_8918Uncharacterized protein. (441 aa)
AB675_4221ATP-dependent RNA helicase dbp7; Belongs to the DEAD box helicase family. (753 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (1342 aa)
AB675_9725Uncharacterized protein. (288 aa)
AB675_9240U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (656 aa)
AB675_9367Uncharacterized protein. (791 aa)
AB675_9730Putative ATP-dependent RNA helicase DHR1. (1243 aa)
AB675_9678tRNA (Adenine(58)-N(1))-methyltransferase catalytic subunit trm61. (485 aa)
AB675_4505Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (431 aa)
AB675_2101Nucleolar protein 58. (619 aa)
AB675_2060Putative NOC2 family protein. (113 aa)
AB675_7772ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family. (530 aa)
AB675_9087rRNA-processing protein fcf2. (233 aa)
AB675_7602Double-strand-specific pac1 ribonuclease. (311 aa)
AB675_5342tRNA (Adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6. (606 aa)
AB675_6269U3 small nucleolar RNA-associated protein 10. (1788 aa)
AB675_7908tRNA (Guanine(26)-N(2))-dimethyltransferase, mitochondrial; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (762 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (705 aa)
AB675_5652Putative RNA-binding protein. (801 aa)
AB675_549zf-LYAR domain-containing protein. (544 aa)
AB675_832Curved DNA-binding protein. (412 aa)
AB675_500Putative U3 small nucleolar RNA-associated protein 13. (920 aa)
AB675_1880Uncharacterized protein. (493 aa)
AB675_496Uncharacterized protein. (572 aa)
TRM8tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (333 aa)
AB675_599Ribosomal RNA-processing protein 17. (235 aa)
AB675_298Exosome complex exonuclease dis3; Belongs to the RNR ribonuclease family. (1004 aa)
Your Current Organism:
Phialophora attae
NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014
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