STRINGSTRING
AB675_7189 AB675_7189 AB675_9999 AB675_9999 AB675_3220 AB675_3220 AB675_12142 AB675_12142 AB675_9327 AB675_9327 AB675_9858 AB675_9858 AB675_6910 AB675_6910 AB675_8626 AB675_8626 AB675_8979 AB675_8979 AB675_4235 AB675_4235 AB675_3199 AB675_3199 YTM1 YTM1 AB675_7190 AB675_7190 ERB1 ERB1 NOP7 NOP7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AB675_718960S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
AB675_9999Ribosome biogenesis protein brx1. (336 aa)
AB675_322025S rRNA (Cytosine-C(5))-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (785 aa)
AB675_12142rRNA-processing protein EBP2. (419 aa)
AB675_9327Protein MAK16; Belongs to the MAK16 family. (312 aa)
AB675_9858Ribosome production factor 1. (426 aa)
AB675_6910Putative ribosome biogenesis protein C8F11.04. (382 aa)
AB675_8626RNA helicase. (606 aa)
AB675_8979Putative RNA-binding protein. (481 aa)
AB675_4235Ribosome assembly factor mrt4. (203 aa)
AB675_3199Uncharacterized protein. (363 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (462 aa)
AB675_7190Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (671 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (1342 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (705 aa)
Your Current Organism:
Phialophora attae
NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014
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