(7 nodes) Protein refolding, and Hsp70 protein network (Phialophora attae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AB675_10455	Heat shock protein 60; Belongs to the chaperonin (HSP60) family. (584 aa)
	AB675_4443	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family. (114 aa)
	AB675_4853	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family. (676 aa)
	AB675_10808	Uncharacterized protein; Belongs to the GrpE family. (261 aa)
	AB675_2165	Chaperone protein dnaK. (568 aa)
	AB675_6453	Mitochondrial import inner membrane translocase subunit TIM44; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the Tim44 family. (503 aa)
	AB675_8212	Uncharacterized protein. (452 aa)

Your Current Organism:

Phialophora attae

NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AB675_10455	AB675_10808	A0A0N0NIL6	A0A0N1H5A0	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Uncharacterized protein; Belongs to the GrpE family.	0.936
AB675_10455	AB675_2165	A0A0N0NIL6	A0A0N1H7U7	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Chaperone protein dnaK.	0.943
AB675_10455	AB675_4443	A0A0N0NIL6	A0A0N0NLD1	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family.	0.998
AB675_10455	AB675_4853	A0A0N0NIL6	A0A0N1H3A7	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	0.985
AB675_10455	AB675_6453	A0A0N0NIL6	A0A0N1HFT2	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Mitochondrial import inner membrane translocase subunit TIM44; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the Tim44 family.	0.693
AB675_10455	AB675_8212	A0A0N0NIL6	A0A0N1P130	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Uncharacterized protein.	0.816
AB675_10808	AB675_10455	A0A0N1H5A0	A0A0N0NIL6	Uncharacterized protein; Belongs to the GrpE family.	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	0.936
AB675_10808	AB675_2165	A0A0N1H5A0	A0A0N1H7U7	Uncharacterized protein; Belongs to the GrpE family.	Chaperone protein dnaK.	0.942
AB675_10808	AB675_4443	A0A0N1H5A0	A0A0N0NLD1	Uncharacterized protein; Belongs to the GrpE family.	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family.	0.971
AB675_10808	AB675_4853	A0A0N1H5A0	A0A0N1H3A7	Uncharacterized protein; Belongs to the GrpE family.	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	0.987
AB675_10808	AB675_6453	A0A0N1H5A0	A0A0N1HFT2	Uncharacterized protein; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit TIM44; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the Tim44 family.	0.961
AB675_10808	AB675_8212	A0A0N1H5A0	A0A0N1P130	Uncharacterized protein; Belongs to the GrpE family.	Uncharacterized protein.	0.795
AB675_2165	AB675_10455	A0A0N1H7U7	A0A0N0NIL6	Chaperone protein dnaK.	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	0.943
AB675_2165	AB675_10808	A0A0N1H7U7	A0A0N1H5A0	Chaperone protein dnaK.	Uncharacterized protein; Belongs to the GrpE family.	0.942
AB675_2165	AB675_4443	A0A0N1H7U7	A0A0N0NLD1	Chaperone protein dnaK.	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family.	0.842
AB675_2165	AB675_6453	A0A0N1H7U7	A0A0N1HFT2	Chaperone protein dnaK.	Mitochondrial import inner membrane translocase subunit TIM44; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the Tim44 family.	0.897
AB675_2165	AB675_8212	A0A0N1H7U7	A0A0N1P130	Chaperone protein dnaK.	Uncharacterized protein.	0.815
AB675_4443	AB675_10455	A0A0N0NLD1	A0A0N0NIL6	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family.	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	0.998
AB675_4443	AB675_10808	A0A0N0NLD1	A0A0N1H5A0	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family.	Uncharacterized protein; Belongs to the GrpE family.	0.971
AB675_4443	AB675_2165	A0A0N0NLD1	A0A0N1H7U7	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family.	Chaperone protein dnaK.	0.842