STRINGSTRING
AB675_4845 AB675_4845 AB675_5871 AB675_5871 AB675_6284 AB675_6284 AB675_7842 AB675_7842 AB675_4933 AB675_4933 AB675_10026 AB675_10026 AB675_1152 AB675_1152 AB675_5276 AB675_5276 AB675_4333 AB675_4333 AB675_7709 AB675_7709 AB675_12139 AB675_12139 AB675_6659 AB675_6659 AB675_9250 AB675_9250 AB675_9665 AB675_9665 AB675_10585 AB675_10585 AB675_2755 AB675_2755 AB675_476 AB675_476 AB675_280 AB675_280 AB675_2672 AB675_2672 AB675_9074 AB675_9074 AB675_6347 AB675_6347 AB675_8184 AB675_8184 AB675_10782 AB675_10782 AB675_1366 AB675_1366 AB675_10998 AB675_10998 AB675_9928 AB675_9928 AB675_12161 AB675_12161 AB675_3006 AB675_3006 AB675_11723 AB675_11723 AB675_2671 AB675_2671 AB675_8452 AB675_8452 AB675_5527 AB675_5527 AB675_10781 AB675_10781 AB675_5269 AB675_5269 AB675_4694 AB675_4694 AB675_4198 AB675_4198 AB675_3017 AB675_3017 AB675_1151 AB675_1151 AB675_886 AB675_886 AB675_8299 AB675_8299 AB675_10205 AB675_10205
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AB675_4845Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (667 aa)
AB675_5871Uncharacterized protein. (465 aa)
AB675_6284Cell division control protein 73. (421 aa)
AB675_7842Transcription initiation factor IIA large subunit. (355 aa)
AB675_4933Transcription initiation factor IIF subunit beta. (383 aa)
AB675_10026Transcription initiation factor TFIID subunit 6. (505 aa)
AB675_1152Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (114 aa)
AB675_5276Transcription initiation factor IIE subunit alpha. (492 aa)
AB675_4333Transcription initiation factor TFIID subunit 2. (1576 aa)
AB675_7709RNA polymerase-associated protein. (606 aa)
AB675_12139Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (232 aa)
AB675_6659Cyclin-dependent kinase 20. (376 aa)
AB675_9250Uncharacterized protein. (258 aa)
AB675_9665Tetratricopeptide repeat protein 1. (1223 aa)
AB675_10585Transcription initiation factor IIE subunit beta. (223 aa)
AB675_2755Acyl_transf_3 domain-containing protein. (510 aa)
AB675_476Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily. (415 aa)
AB675_280RNA polymerase II transcription factor B subunit 3. (270 aa)
AB675_2672Transcription initiation factor TFIID subunit 7. (701 aa)
AB675_9074Cyclin CCL1; Belongs to the cyclin family. (401 aa)
AB675_6347Transcription initiation factor TFIID subunit 12. (558 aa)
AB675_8184Uncharacterized protein. (551 aa)
AB675_10782Putative RNA polymerase II transcription factor B subunit 1. (452 aa)
AB675_1366DUF4211 domain-containing protein. (609 aa)
AB675_10998RNA polymerase II transcription factor B subunit 4. (445 aa)
AB675_9928DNA-directed RNA polymerase II subunit RPB11. (167 aa)
AB675_12161Uncharacterized protein. (273 aa)
AB675_3006Transcription initiation factor TFIID subunit 5. (741 aa)
AB675_11723Uncharacterized protein. (576 aa)
AB675_2671BTP domain-containing protein. (258 aa)
AB675_8452RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (493 aa)
AB675_5527TAFII28 domain-containing protein. (361 aa)
AB675_10781Putative RNA polymerase II transcription factor B subunit 1. (158 aa)
AB675_5269DUF3591 domain-containing protein. (1218 aa)
AB675_4694Transcription initiation factor TFIID subunit 9. (289 aa)
AB675_4198DNA-directed RNA polymerase II subunit RPB3. (199 aa)
AB675_3017DNA repair helicase RAD25. (838 aa)
AB675_1151Uncharacterized protein. (289 aa)
AB675_886DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
AB675_8299TAF8_C domain-containing protein. (334 aa)
AB675_10205RNA polymerase II-associated protein RBA50. (430 aa)
Your Current Organism:
Phialophora attae
NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014
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