18 items (Phialophora attae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AB675_4647	Nuclear elongation and deformation protein 1. (729 aa)
	AB675_152	Putative FCP1 homology domain-containing protein. (625 aa)
	AB675_11536	Nucleoporin. (1506 aa)
	AB675_2670	Uncharacterized protein. (729 aa)
	AB675_11748	Protein kinase domain-containing protein. (671 aa)
	AB675_8440	Nucleoporin NSP1. (693 aa)
	AB675_11222	Protein kinase domain-containing protein. (1156 aa)
	AB675_7273	Protein kinase domain-containing protein. (501 aa)
	AB675_4130	Uncharacterized protein. (316 aa)
	AB675_5468	Protein kinase domain-containing protein. (697 aa)
	AB675_8582	Nuclear pore complex protein NUP98A. (817 aa)
	AB675_5398	Protein kinase domain-containing protein. (738 aa)
	AB675_919	Uncharacterized protein. (324 aa)
	AB675_4986	Uncharacterized protein. (632 aa)
	AB675_1942	RanBD1 domain-containing protein. (1465 aa)
	AB675_6376	Nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (405 aa)
	AB675_4888	Sporulation-specific protein SPO7. (469 aa)
	AB675_9260	Nuclear envelope morphology protein 1. (478 aa)

Your Current Organism:

Phialophora attae

NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AB675_11536	AB675_1942	A0A0N1H961	A0A0N0NPR0	Nucleoporin.	RanBD1 domain-containing protein.	0.999
AB675_11536	AB675_2670	A0A0N1H961	A0A0N1HHD8	Nucleoporin.	Uncharacterized protein.	0.738
AB675_11536	AB675_4130	A0A0N1H961	A0A0N1NYG9	Nucleoporin.	Uncharacterized protein.	0.904
AB675_11536	AB675_4986	A0A0N1H961	A0A0N0NLQ4	Nucleoporin.	Uncharacterized protein.	0.904
AB675_11536	AB675_6376	A0A0N1H961	A0A0N0NQC6	Nucleoporin.	Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.	0.988
AB675_11536	AB675_8440	A0A0N1H961	A0A0N1I060	Nucleoporin.	Nucleoporin NSP1.	0.999
AB675_11536	AB675_8582	A0A0N1H961	A0A0N1P1X3	Nucleoporin.	Nuclear pore complex protein NUP98A.	0.904
AB675_11536	AB675_919	A0A0N1H961	A0A0N1P3Y7	Nucleoporin.	Uncharacterized protein.	0.738
AB675_152	AB675_4647	A0A0N1H7Q5	A0A0N1H7G7	Putative FCP1 homology domain-containing protein.	Nuclear elongation and deformation protein 1.	0.857
AB675_1942	AB675_11536	A0A0N0NPR0	A0A0N1H961	RanBD1 domain-containing protein.	Nucleoporin.	0.999
AB675_1942	AB675_2670	A0A0N0NPR0	A0A0N1HHD8	RanBD1 domain-containing protein.	Uncharacterized protein.	0.996
AB675_1942	AB675_4130	A0A0N0NPR0	A0A0N1NYG9	RanBD1 domain-containing protein.	Uncharacterized protein.	0.999
AB675_1942	AB675_4986	A0A0N0NPR0	A0A0N0NLQ4	RanBD1 domain-containing protein.	Uncharacterized protein.	0.999
AB675_1942	AB675_6376	A0A0N0NPR0	A0A0N0NQC6	RanBD1 domain-containing protein.	Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.	0.999
AB675_1942	AB675_8440	A0A0N0NPR0	A0A0N1I060	RanBD1 domain-containing protein.	Nucleoporin NSP1.	0.997
AB675_1942	AB675_8582	A0A0N0NPR0	A0A0N1P1X3	RanBD1 domain-containing protein.	Nuclear pore complex protein NUP98A.	0.999
AB675_1942	AB675_919	A0A0N0NPR0	A0A0N1P3Y7	RanBD1 domain-containing protein.	Uncharacterized protein.	0.996
AB675_2670	AB675_11536	A0A0N1HHD8	A0A0N1H961	Uncharacterized protein.	Nucleoporin.	0.738
AB675_2670	AB675_1942	A0A0N1HHD8	A0A0N0NPR0	Uncharacterized protein.	RanBD1 domain-containing protein.	0.996
AB675_2670	AB675_4130	A0A0N1HHD8	A0A0N1NYG9	Uncharacterized protein.	Uncharacterized protein.	0.701