41 items (Phialophora attae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AB675_8652	COP9 signalosome complex subunit 2. (496 aa)
	AB675_11664	DNA-directed RNA polymerase II subunit RPB2. (445 aa)
	AB675_8947	RPOL4c domain-containing protein. (156 aa)
	AB675_6079	COP9 signalosome complex subunit 6. (411 aa)
	AB675_3956	DNA-directed RNA polymerase II subunit RPB1. (304 aa)
	AB675_3017	DNA repair helicase RAD25. (838 aa)
	AB675_11965	Cullin-4A; Belongs to the cullin family. (887 aa)
	AB675_12027	Ubiquitin-60S ribosomal protein L40. (465 aa)
	AB675_4198	DNA-directed RNA polymerase II subunit RPB3. (199 aa)
	AB675_11362	Uncharacterized protein. (327 aa)
	AB675_7454	DNA repair helicase rad15. (778 aa)
	AB675_10781	Putative RNA polymerase II transcription factor B subunit 1. (158 aa)
	AB675_9350	RING-box protein 1. (125 aa)
	AB675_8452	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (493 aa)
	AB675_2758	COP9 signalosome complex subunit 1. (496 aa)
	AB675_2305	DNA-directed RNA polymerase II subunit rpb7. (167 aa)
	AB675_9928	DNA-directed RNA polymerase II subunit RPB11. (167 aa)
	AB675_4211	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
	AB675_10998	RNA polymerase II transcription factor B subunit 4. (445 aa)
	AB675_10782	Putative RNA polymerase II transcription factor B subunit 1. (452 aa)
	AB675_3930	Switch 2. (1068 aa)
	AB675_4719	DNA damage-binding protein 1. (1181 aa)
	AB675_2304	Uncharacterized protein. (519 aa)
	AB675_280	RNA polymerase II transcription factor B subunit 3. (270 aa)
	AB675_476	Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily. (415 aa)
	AB675_415	DNA excision repair protein ckn1. (342 aa)
	AB675_10564	Peptidyl-prolyl cis-trans isomerase E. (151 aa)
	AB675_7963	COP9 signalosome complex subunit 3. (493 aa)
	AB675_2061	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (79 aa)
	AB675_1574	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (237 aa)
	AB675_886	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
	AB675_5943	BZIP domain-containing protein. (260 aa)
	AB675_8819	Ubiquitin-40S ribosomal protein S27a. (158 aa)
	AB675_11665	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family. (724 aa)
	AB675_4338	DNA repair protein rhp26. (1207 aa)
	AB675_1327	COP9 signalosome complex subunit 5. (363 aa)
	AB675_3957	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1431 aa)
	AB675_9517	Uncharacterized protein. (949 aa)
	AB675_2030	COP9 signalosome complex subunit 7. (297 aa)
	AB675_9074	Cyclin CCL1; Belongs to the cyclin family. (401 aa)
	AB675_2361	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (154 aa)

Your Current Organism:

Phialophora attae

NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AB675_10564	AB675_11362	A0A0N1HBM2	A0A0N0NM78	Peptidyl-prolyl cis-trans isomerase E.	Uncharacterized protein.	0.994
AB675_10564	AB675_4211	A0A0N1HBM2	A0A0N1H2G8	Peptidyl-prolyl cis-trans isomerase E.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.441
AB675_10781	AB675_10782	A0A0N0NMV4	A0A0N1H5C0	Putative RNA polymerase II transcription factor B subunit 1.	Putative RNA polymerase II transcription factor B subunit 1.	0.708
AB675_10781	AB675_10998	A0A0N0NMV4	A0A0N1H3M1	Putative RNA polymerase II transcription factor B subunit 1.	RNA polymerase II transcription factor B subunit 4.	0.963
AB675_10781	AB675_11664	A0A0N0NMV4	A0A0N0NI85	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerase II subunit RPB2.	0.849
AB675_10781	AB675_11665	A0A0N0NMV4	A0A0N1NVV2	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family.	0.849
AB675_10781	AB675_12027	A0A0N0NMV4	A0A0N0NKU8	Putative RNA polymerase II transcription factor B subunit 1.	Ubiquitin-60S ribosomal protein L40.	0.601
AB675_10781	AB675_1574	A0A0N0NMV4	A0A0N1HKB5	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.901
AB675_10781	AB675_2061	A0A0N0NMV4	A0A0N1HCW2	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.901
AB675_10781	AB675_2304	A0A0N0NMV4	A0A0N1HAC6	Putative RNA polymerase II transcription factor B subunit 1.	Uncharacterized protein.	0.849
AB675_10781	AB675_2305	A0A0N0NMV4	A0A0N0NRW2	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerase II subunit rpb7.	0.900
AB675_10781	AB675_2361	A0A0N0NMV4	A0A0N1P2A8	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.912
AB675_10781	AB675_280	A0A0N0NMV4	A0A0N1HBD9	Putative RNA polymerase II transcription factor B subunit 1.	RNA polymerase II transcription factor B subunit 3.	0.951
AB675_10781	AB675_3017	A0A0N0NMV4	A0A0N0NKM3	Putative RNA polymerase II transcription factor B subunit 1.	DNA repair helicase RAD25.	0.956
AB675_10781	AB675_3930	A0A0N0NMV4	A0A0N1H5C7	Putative RNA polymerase II transcription factor B subunit 1.	Switch 2.	0.638
AB675_10781	AB675_3956	A0A0N0NMV4	A0A0N0NK16	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerase II subunit RPB1.	0.886
AB675_10781	AB675_3957	A0A0N0NMV4	A0A0N1NYV5	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.886
AB675_10781	AB675_415	A0A0N0NMV4	A0A0N1HBK5	Putative RNA polymerase II transcription factor B subunit 1.	DNA excision repair protein ckn1.	0.606
AB675_10781	AB675_4198	A0A0N0NMV4	A0A0N0NL03	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerase II subunit RPB3.	0.905
AB675_10781	AB675_4211	A0A0N0NMV4	A0A0N1H2G8	Putative RNA polymerase II transcription factor B subunit 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.901