STRINGSTRING
AB675_2061 AB675_2061 AB675_9103 AB675_9103 AB675_476 AB675_476 AB675_280 AB675_280 AB675_2304 AB675_2304 AB675_2457 AB675_2457 AB675_3328 AB675_3328 AB675_9675 AB675_9675 AB675_10782 AB675_10782 AB675_10998 AB675_10998 AB675_5017 AB675_5017 AB675_4211 AB675_4211 AB675_9928 AB675_9928 AB675_3207 AB675_3207 AB675_4765 AB675_4765 AB675_2305 AB675_2305 AB675_8452 AB675_8452 AB675_7073 AB675_7073 AB675_4845 AB675_4845 AB675_11664 AB675_11664 AB675_8947 AB675_8947 AB675_3956 AB675_3956 AB675_3117 AB675_3117 AB675_3017 AB675_3017 AB675_1012 AB675_1012 AB675_6395 AB675_6395 AB675_8178 AB675_8178 AB675_3957 AB675_3957 AB675_10013 AB675_10013 AB675_4198 AB675_4198 AB675_9680 AB675_9680 AB675_886 AB675_886 AB675_6628 AB675_6628 AB675_2361 AB675_2361 AB675_9074 AB675_9074 AB675_11665 AB675_11665 AB675_4933 AB675_4933 AB675_1574 AB675_1574 AB675_5582 AB675_5582 AB675_10781 AB675_10781 AB675_7454 AB675_7454 AB675_11361 AB675_11361
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AB675_2061DNA-directed RNA polymerases I, II, and III subunit RPABC5. (79 aa)
AB675_9103Serine/threonine-protein kinase bur1. (623 aa)
AB675_476Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily. (415 aa)
AB675_280RNA polymerase II transcription factor B subunit 3. (270 aa)
AB675_2304Uncharacterized protein. (519 aa)
AB675_2457Uncharacterized protein. (357 aa)
AB675_3328Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1064 aa)
AB675_9675Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (123 aa)
AB675_10782Putative RNA polymerase II transcription factor B subunit 1. (452 aa)
AB675_10998RNA polymerase II transcription factor B subunit 4. (445 aa)
AB675_5017FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (504 aa)
AB675_4211DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
AB675_9928DNA-directed RNA polymerase II subunit RPB11. (167 aa)
AB675_3207Transcription elongation factor spt5. (1377 aa)
AB675_4765Transcription elongation factor S-II. (307 aa)
AB675_2305DNA-directed RNA polymerase II subunit rpb7. (167 aa)
AB675_8452RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (493 aa)
AB675_7073CTD kinase subunit beta; Belongs to the cyclin family. (729 aa)
AB675_4845Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (667 aa)
AB675_11664DNA-directed RNA polymerase II subunit RPB2. (445 aa)
AB675_8947RPOL4c domain-containing protein. (156 aa)
AB675_3956DNA-directed RNA polymerase II subunit RPB1. (304 aa)
AB675_3117CTD kinase subunit alpha. (1093 aa)
AB675_3017DNA repair helicase RAD25. (838 aa)
AB675_1012Elongin-C; Belongs to the SKP1 family. (105 aa)
AB675_6395FACT complex subunit spt16. (1024 aa)
AB675_8178RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (589 aa)
AB675_3957DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1431 aa)
AB675_10013TPR_REGION domain-containing protein. (427 aa)
AB675_4198DNA-directed RNA polymerase II subunit RPB3. (199 aa)
AB675_9680CFEM domain-containing protein. (332 aa)
AB675_886DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
AB675_6628Cyclin pch1; Belongs to the cyclin family. (522 aa)
AB675_2361DNA-directed RNA polymerases I, II, and III subunit RPABC2. (154 aa)
AB675_9074Cyclin CCL1; Belongs to the cyclin family. (401 aa)
AB675_11665DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family. (724 aa)
AB675_4933Transcription initiation factor IIF subunit beta. (383 aa)
AB675_1574DNA-directed RNA polymerases I, II, and III subunit RPABC1. (237 aa)
AB675_5582Uncharacterized protein. (743 aa)
AB675_10781Putative RNA polymerase II transcription factor B subunit 1. (158 aa)
AB675_7454DNA repair helicase rad15. (778 aa)
AB675_11361Transcription factor bye1. (928 aa)
Your Current Organism:
Phialophora attae
NCBI taxonomy Id: 1664694
Other names: CBS 131958, P. attae, Phialophora attae Attili-Angelis, Duarte, Stielow & de Hoog, 2014
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